[Freesurfer] volumetric version of fsaverage brain

Hello All, Which is the volumetric version of the fsaverage brain in freesurfer ? Can you tell me what is it called ? Thanks Ri ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] recon-all: Stages 6-11 only

Hi Nasim, I don't think there's a flag for that, but you can specify exactly which steps you want on the command line (it will just be rather long).. cheers, Bruce On Mon, 12 Apr 2010, Nasim Maleki wrote: > Hi all, > > Is there a flag that you could run stages 6-11 ONLY of the autorecon proces

[Freesurfer] recon-all: Stages 6-11 only

Hi all, Is there a flag that you could run stages 6-11 ONLY of the autorecon process stages (after running the stages 1-5) instead of doing the whole 6-23 with -autorecon2 flag? Thank you, Nasim ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.

Re: [Freesurfer] creating a binary mask volume

you can also use mri_vol2vol with --regheader. Bruce Fischl wrote: > yes, that sounds right > Bruce > On Sun, 11 Apr 2010, Mehul Sampat wrote: > > >> Thanks Bruce. Following that, to convert the rth.mgz back to native space I >> think I can use the following command: >> mri_convert -rl orig/001

Re: [Freesurfer] mri_label2vol: how to make the opposite direction?

The id is the value in the mask. So if it's a binary mask, use --id 1 John Gelburg wrote: > I am sorry, but I still struggle to make it work :( > Here is my syntax: > mri_cor2label --i my_Analyze_mask.nii --l ./freeSurferMask.label > I am getting "ERROR: must supply a label id" error message. >

Re: [Freesurfer] Extracting time series from aparc.a2009s+aseg.mgz

Use mri_segstats with the --avgwf option. liang wang wrote: > Hi FSusers, > > Is there a way to extract averaged BOLD signal from the > identified cortical regions in aparc.a2009s+aseg.mgz. Thanks > > Liang > > -- > Liang Wang, PhD > Postdoctoral Fellow > Woodward Lab > Department of Psychia

[Freesurfer] Gabriel Castrillón wants to stay in t ouch on LinkedIn

LinkedIn Gabriel Castrillón souhaite se connecter à vous sur LinkedIn : -- Freesurfer, I'd like to add you to my professional network on LinkedIn. - Gabriel Castrillón Accepter l'invitation de Gabriel Castrillón http://www.linkedin.com/e/qaAr-

[Freesurfer] Postdoctoral Fellowship: Multimodal Imaging at MGH

Postdoctoral Fellowship: Multimodal Imaging Description: A two year postdoctoral position pursuing multimodal imaging is available with the TRANSCEND Research Program (www.transcendresearch.org) at the Martinos Center for Biomedical Imaging in Charlestown, MA (www.martinos.org) which is affiliate

[Freesurfer] problems on converting images from the GE scanner

Hi FreeSurfer users, I have the anatomical MR images from the GE scanner, and want to convert the images into the mgz file. These images's file name looks as follows: IM1 IM2 . . IM176 I use the function "mri_convert" to converting the file: % mri_convert -it dicom IM1 $SUBJECTS_DIR/15/mri/or

[Freesurfer] Miao Wen wants to stay in touch on LinkedIn

LinkedIn Miao Wen souhaite se connecter à vous sur LinkedIn : -- Freesurfer, I'd like to add you to my professional network on LinkedIn. - Miao Wen Accepter l'invitation de Miao Wen http://www.linkedin.com/e/qaAr-Z_86TRZ5lXG-dA9kZQ49qSe59qYFaT