Hm,
the brainmask is mapped from the base to the individual TP space and
then the T1 image of the TP is masked to create the brainmask for the
specific TP. That means the brainmask should look exactly like the T1
for all voxel within the mask. (And therefore very similar to the orig,
except for in
Hello, Martin
Yes, the longitudinal brainmask I meant is the brainmask.mgz in the
longitudinal dir, not from the base template.
Thanks!
Guang
From: mreu...@nmr.mgh.harvard.edu
To: freesurfer...@hotmail.com
Date: Tue, 6 Apr 2010 12:27:19 -0400
CC: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Fr
Hi,
I have a question regarding how to convert a cortical thickness map (i.e.
lh.thickness) to a NIFTY file.
I have a subject called 'subjid' and I run recon-all on it. So I got the
?h.thickness files. Does freesurfer
provide a tool to convert the surface file to a nifty file?
I tried using the
Hi Guang,
what do you mean with 'longitudinal brainmask'?
You need to overlay the segmentation to the brainmask in the
longitudinal subject dir. The brainmask in the base dir is in a
different space.
Best
Martin
On Apr 6, 2010, at 11:29, Guang Zeng wrote:
Hi, there,
I ran the freesurfe
If you don't have a .mat file, it will assume that it is in radiological
order. You can bring it up in tkmedit to verify (it displays in
radiological convention).
doug
rida...@mail.med.upenn.edu wrote:
> Hello All,
>
> If my input images are in Analyze format in Radiologic convention, does
>
Hello,
I was wondering whether you could help me wit this. I had reported a
talairach error during recon and was asked to check what the rawavg looked
like. Sagital is shown instead of Coronal, and upside down at that! Clearly,
there is some formatting error. Is there a way to fix this within Frees
because the partial volume estimates are different. Use the aseg.stats
On Tue, 6 Apr 2010,
liyari5018 wrote:
> Hi freesurfer experts,
>
> why same structure has two different volume in aseg.stats and wmparc.stats
> , for example: amygdala.
>
>
> thanks for your reply!
>
> LJ
>
__
Hi freesurfer experts,
why same structure has two different volume in aseg.stats and wmparc.stats ,
for example: amygdala.
thanks for your reply!
LJ
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailma
