either can be used. -tp is just short for -base-tp
On Fri, 2009-06-19 at 10:27 -0500, Dabbs (Kevin) wrote:
>
>
> The command line arguments for creating the base subject in Freesurfer
> Ver. 4.4 longitudinal stream do not agree between the Wiki and recon-
> all --help.
>
> On the Wiki support
try running:
fixup_mni_paths
On Fri, 2009-06-19 at 09:38 +0200, Ahmed, F, Me wrote:
> Sorry, according to the thread that you provided me, nu_correct uses perl, so
> make sure that perl is found at:
>
> /usr/bin/perl
>
>
> "perl" is found at /usr/bin/perl, so it is in the correct place and
I looked at the revision history of the wiki and it shows a change to
"-tp" so I believe that is the correct one to use. However, I was able to
run both versions without error. When Nick returns, he can confirm but I
think you should be fine using -tp.
Allison
--
On Fri, 19 Jun 2009, Dabbs (
The command line arguments for creating the base subject in Freesurfer Ver. 4.4
longitudinal stream do not agree between the Wiki and recon-all --help.
On the Wiki support page,
2. create the base template and process it cross sectionally:
recon-all -base -tp -tp ... -all
>From recon-all
Dear all
I'm trying to compare the cortical thickness between the neurodegenerative
disease patient group and normal controls.
To match the age, I selected subjects from both groups and finally included
age-matched groups into freesurfer thickness analysis (similar mean age, same
age distri
Sorry, according to the thread that you provided me, nu_correct uses perl, so
make sure that perl is found at:
/usr/bin/perl
"perl" is found at /usr/bin/perl, so it is in the correct place and
theoretically, it should be working. But it isn't. Is there any reason why that
could be happening?
Hi,
Thank you for your help and in providing that link. I found "perl" and set it
to the correct place, tried to do "fixup_mni_paths", and got the following
message when trying to find "nu_correct"
[...@localhost bin]$ nu_correct
Can't locate MNI/Startup.pm in @INC (@INC contains:
/usr/lib/pe
