I'm rerunning it with -no-talcheck. It looks to be hanging on finding control
points in the Left_Cerebral_White_matter. Can this one step take more than 24
hrs? The "usual" time for a recon-all was @30 hrs for the other brains.
Thanks,
Deane
Quoting Nick Schmansky :
> Deane,
>
> the -no-tal
Deane,
the -no-talcheck flag is your best option now, considering that a manual
alignment is no better than the automatic.
What is the age range of your subjects? We're implementing an alternate
target consisting of young adults scanned at 3T, which works better for
that cohort over the adults i
Hello,
I had a Talairach QA check failure, with the error log indicating a Z = -8 which
was below the criterion of z =-6.
I then used tkregister2 to attempt a manual alignment (no surf orig was
available). After visual inspection, the subject and Talairach volumes looked
really closely aligned
I'll leave 1-3 for Doug and Nick. As for 4, this is a QA step to make
sure nothing failed in the spherical registration, or the
segmentation/surface reconstruction in that region.
cheers
Bruce
On Thu, 11 Jun 2009
nmal...@mclean.harvard.edu wrote:
Dear all,
1-Is there a way to use mris_
