hmmm, not sure about the tksurfer errors, but try not running tkmedit in
the background (take the & out)
sounds like you have either a version mismatch or a tcl problem, but I'll
leave it for Nick or Krish.
cheers,
Bruce
On Fri, 22 May 2009, Mayuresh Korgaonkar
wrote:
Dear Freesurfer au
Dear Freesurfer authors and users,
I recently installed the CentOS 4*86_64 Freesurfer v4.3.0 on a RedHat machine.
After following each installation step, I have reached the testingFreesurfer
module. However I seem to be having problems in running the first few steps. On
running the "tkmedit b
Thank you, I'll try that :)
Best wishes
Kathrine
> you can turn off the hypointensities with -nowmsa in recon-all, but not
> the choroid
> On Thu, 21 May 2009, Kathrine Skak Madsen wrote:
>
>> Hi FreeSurfer Experts
>>
>> Is there a way to turn of the labelling of hypointensities and choroid
>> p
you can turn off the hypointensities with -nowmsa in recon-all, but not
the choroid
On Thu, 21 May 2009, Kathrine Skak Madsen wrote:
Hi FreeSurfer Experts
Is there a way to turn of the labelling of hypointensities and choroid
plexus?
Thank you in advance.
Best wishes
Kathrine
__
Hi FreeSurfer Experts
Is there a way to turn of the labelling of hypointensities and choroid
plexus?
Thank you in advance.
Best wishes
Kathrine
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinf
what do you mean by "flip"? left-right reversal?
xfore...@ucla.edu wrote:
Hi everyone,
my name's Andy, I am a researcher in UCLA brain mapping group
using Freesurfer we successfully generated the Surface or the
vervet monkey brain, and our next step is to perform a surface
segmentation using an
Hi Andy,
I think mris_reverse will do this.
cheers,
Bruce
On Thu, 21 May 2009 xfore...@ucla.edu
wrote:
Hi everyone,
my name's Andy, I am a researcher in UCLA brain mapping group
using Freesurfer we successfully generated the Surface or the
vervet monkey brain, and our next step is to perfor
Hi everyone,
my name's Andy, I am a researcher in UCLA brain mapping group
using Freesurfer we successfully generated the Surface or the
vervet monkey brain, and our next step is to perform a surface
segmentation using an .gcs file we created by hand.
If there's anyway to flip the freesurfer form
Karl,
fsaverage should be included in the $FREESURFER_HOME/subjects directory
of the distribution. Its used as the common-space subject upon which to
sample the group data. See the group analysis tutorials on the wiki for
more info.
Nick
On Fri, 2009-05-22 at 00:48 +0800, karlkarl wrote:
> Hel
Hello,
I have finished the recon-all on all the participants and ready for the group
analysis. But I didn't find the fsaverage. Did I miss someting in the
recon-all? How can I get the fsaverage (If I have two groups, do I need
fsaverage for each group)?
thanks a lot!
Karl
_
Found: 70, Files Expected (lRep+1): 120
FileName./44-24-01.dcm
Are the dti scans I unpacked usable, or do I need to change my unpack
command?
Thanks,
Jesse
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.3.
freesurfer/stable4
Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.3.1-20090521
RedHat release: CentOS release 5.3 (Final)
Kernel info: Linux 2.6.18-128.1.6.el5 x86_64
NMR Center info (/space/freesurfer exists):
machine: vantz
SUBJECTS_DIR: /space/ventzl/36/users/RespMon12C/subjects
P
12 matches
Mail list logo
