Re: [Freesurfer] matlab dependencies

2008-12-07 Thread Nick Schmansky
Sid, None of the default processing (that, recon-all -all) uses matlab. Only the local gyrification index (the -lgi flag, which is not part of the default stream) requires matlab. FS-FAST requires matlab, but that is a tool outside of the recon-all stream. We use a cluster of some 300 Linux nod

[Freesurfer] overlay

2008-12-07 Thread luketseng
hi, how do i overlay a .mgz image over an image in qdec so i can compare the two? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] matlab dependencies

2008-12-07 Thread Siddharth Srivastava
Hi all, 1) which steps of the freesurfer processing pipeline depend on/ use matlab for execution? I am trying to find out if we have to have matlab installed on all the computing nodes on our cluster here, or, if there is just one step, we can process it locally, and submit the downstream

[Freesurfer] Two PhD positions in Neuroimaging of healthy aging and Alzheimer’s disease.

2008-12-07 Thread Jose Luis Cantero Lorente
Dear Freesurfers, The Laboratory of Functional Neuroscience at the Department of Physiology, Anatomy and Cell Biology, University Pablo de Olavide, Seville (Spain), invites applications for two full-time PhD positions to work in neuroimaging (structural and functional) of healthy and pathologic