A command 'mri_convert' can do that
See http://surfer.nmr.mgh.harvard.edu/fswiki/mri_convert
for a detailed description of the binary
Best
Krish
On Nov 17, 2008, at 5:57 PM, Al-Radaideh Ali wrote:
Dear FreeSurfer expert,
Any way that I can convert the mgz back to any analyze format so
tha
Dear FreeSurfer expert,
Any way that I can convert the mgz back to any analyze format so that different
softwares can open it?. if not, any software that can open the mgz other than
freesurfer?
Many thanks
Ali
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This mask is from functional group analysis. Before I did do group
analysis, I have to transfer all individual data into standard space.
Therefore, there is no special reference for this mask. The only
reference whole brain data is the standard talarich dataset in AFNI.
I know if I want to get a pe
Dear FreeSurfer users,
We wanted to make you aware of a paper recently published in Neuron by
Makris et al. (Neuron, 2008, volume 60 issue 1 pp.174 - 188) that may
prompt questions by reviewers of studies employing FreeSurfer. Please
find attached the figure that the authors published in this pap
Thank you so much for your response, Nick!
I uploaded "ROI5.nii" (i.e., abc.nii) just now. This ROI has been in
Talarich space.
Actually, it is from my group functional data. So I did not have
corresponding T1-data.
BTW: when can I read the web page describing the steps taken to get
cortical t
Xiaochu,
I'm putting together a web page describing the steps taken to get
cortical thickness from an ROI defined by a volume mask. Can you send
me these two files so that I can make sure the steps work correctly?
1) the ROI mask file (what you are calling 'abc.nii')
2) the T1-weighted anatomica
Hi Marieke,
we compute the transform (12 parameter) to tal coords, but don't
typically apply it, so you are correct, the T1.mgz is *not* in tal
coords. From the subject's mri dir you can use
mri_convert -at transforms/talairach.xfm T1.mgz T1.tal.mgz
to transform the T1 into tal coords (and
Dear FreeSurfer people,
I have got a very basic question. I would like to (or better: have to)
do some manual tracing on my data.
For this, I want my brains to be motion- and nu-corrected and in
Talairach.
Therefore, I apply the -autorecon1 step to my dataset.
I always assumed that the T1.mg
