Rudolph,
Another suggestion, based on an email on this list earlier this week, is
to add 'threshold' options, like fslmaths allows, to allow usage of your
mris_calc to create masks from significance files.
Nick
On Fri, 2008-10-31 at 22:01 -0400, Bruce Fischl wrote:
> ahhh. Yes, you should updat
ahhh. Yes, you should update it
On Fri, 31 Oct 2008, Rudolph Pienaar wrote:
On Fri, 31 Oct 2008, Bruce Fischl wrote:
Hi Rudolph,
we store things like thickness in 'volume' formats these days - the volumes
are nvertices x 1 x 1. Not sure why it didn't work, I would have thought it
would.
E
On Fri, 31 Oct 2008, Bruce Fischl wrote:
Hi Rudolph,
we store things like thickness in 'volume' formats these days - the volumes
are nvertices x 1 x 1. Not sure why it didn't work, I would have thought it
would.
Errr... I think nonetheless the problem might be the input hack that
'mris_cal
Hi Rudolph,
we store things like thickness in 'volume' formats these days - the volumes
are nvertices x 1 x 1. Not sure why it didn't work, I would have thought it
would. Not sure. Akram: can you run mri_info on the input files and send
along the results?
Bruce
On Sat, 1 Nov 2008
[EMAIL PR
Gotcha. Thanks!
Are there any plans to have this work with all .mgh surface files?
On Oct 31, 2008, at 8:25 PM, [EMAIL PROTECTED] wrote:
mris_calc currently only works with flat curvature files (eg ?
h.curv, ?h.sulc, ?h.area, ?h.thickness, etc) and not on volumes.
--Original Message---
mris_calc currently only works with flat curvature files (eg ?h.curv, ?h.sulc,
?h.area, ?h.thickness, etc) and not on volumes.
--Original Message--
From: Akram Bakkour
Sender: [EMAIL PROTECTED]
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mris_calc
Sent: Oct 31, 2008 20:13
H
Hello,
I have two thickness files I want to subtract one from the other, so I
did:
on thigpen
source /usr/local/freesurfer/nmr-std-env
cd /space/elvin_005/users/akram/AGING_MASSIVE
setenv SUBJECTS_DIR $PWD
mris_surface_stats -mask fsaverage/label/lh.cort_thick.label \
-surf_name $SUBJE
