Re: [Freesurfer] mkanalysis

2008-08-18 Thread Doug Greve
It actually does not matter. It is a false distinction that I made about 8 years ago, and I'm slowly weeding it out of the code (if not people's minds:). doug Elif SIKOGLU wrote: Hello. In the tutorial, for configuring the analysis, it says - ' you will specify the model of task-related si

[Freesurfer] mkanalysis

2008-08-18 Thread Elif SIKOGLU
Hello. In the tutorial, for configuring the analysis, it says - ' you will specify the model of task-related signal in the "Event Related/Block Design" panel.' I have a block design, so l left it checked. However when I was looking through the analysis.info file located bold/analysis, I realized t

Re: [Freesurfer] about aseg.stats

2008-08-18 Thread Pedro Paulo de Magalhães Oliveira Junior
李日 , Index is the number of the vertex. Volume is 335490.0mm3 Norm mean, stddev refers to the pixel intensity values in these areas. 2008/8/18 李日 <[EMAIL PROTECTED]> > Hello: > I have run the recon-all command and it finished without errors. The > FreeSurfer has generated a stats file > $SU

Re: [Freesurfer] talairach transform error

2008-08-18 Thread Nick Schmansky
Michelle, Which version of freesurfer is installed? I think the libg2c dependency was removed in the newest version. Nick On Mon, 2008-08-18 at 11:28 -0500, Michelle W. Voss wrote: > Hello, > > This is my first time trying to use freesurfer on our data. We > collect siemens dicom images, so I

[Freesurfer] talairach transform error

2008-08-18 Thread Michelle W. Voss
Hello, This is my first time trying to use freesurfer on our data. We collect siemens dicom images, so I first manually reconstructed to .mgz format and tried running the recon-all script. I've posted the log below. Any ideas for fix? thanks, Michelle mri_convert -it siemens_dicom -ot mgz ONR

[Freesurfer] about aseg.stats

2008-08-18 Thread 李日
Hello: I have run the recon-all command and it finished without errors. The FreeSurfer has generated a stats file $SUBJECTS_DIR//stats/aseg.stats, there are some information in this file as follows that I can't understand well: ColHeaders Index SegId NVoxels Volume_mm3 StructName norm