Re: [Freesurfer] Vertex information lookup

You can create a label file with the vertices you want, then use mri_label2label, specifying fsaverage as the target subject and --regmethod volume. This will convert the coordinates into mni305 doug Pádraig Kitterick wrote: Dear list, I wish to obtain information about a list of surface ve

Re: [Freesurfer] AW: Freesurfer Digest, Vol 53, Issue 23

I don't have anything to do the Heller-style conjunction. But you can use mri_concat with the --min option to compute the max p-value over a stack of conditions (our sig maps are actually -log10(p), so the min gives you the max p). dolug Steinmann, Iris wrote: Hi, I load Version 4.0,5, and

Re: [Freesurfer] tkmedit reconstruction to perpendicular axes of ROIs

No, but you can apply a rotation in tkmedit (though it might not rotate the surfaces or the aseg). doug Aaron Shmookler wrote: Is it possible to reconstruct an MRI such that the images in tkmedit are perpendicular to the axis of a particular region such as in my ROI the temporal pole? As I

[Freesurfer] tkmedit reconstruction to perpendicular axes of ROIs

Is it possible to reconstruct an MRI such that the images in tkmedit are perpendicular to the axis of a particular region such as in my ROI the temporal pole? As I see them the tkmedit MRIs are oblique slices with the dorsal regions appearing caudally on the tksurfer (volumetric) images relative t