Re: [Freesurfer] dicom to mgz

2008-06-24 Thread Bruce Fischl
do you mean all the dicoms from a single run? Sure, if you give mri_convert the name of one file in the run as input and a .mgz filename as output it will do it On Tue, 24 Jun 2008, Daniel H Choi wrote: Hi, I was wondering if there was a way to change all of the dicom files from one brain to

[Freesurfer] dicom to mgz

2008-06-24 Thread Daniel H Choi
Hi, I was wondering if there was a way to change all of the dicom files from one brain to one .mgz file. Thanks Dan -- Daniel Horim Choi Northwestern University [EMAIL PROTECTED] or [EMAIL PROTECTED] ___ Freesurfer mailing list Freesurfer@nmr.mgh.harv

Re: [Freesurfer] (no subject)

2008-06-24 Thread Pedro Paulo de Magalhães Oliveira Junior
There are two options: 1) You don't have libGLU installed. Solution: Go to http://rpm.pbone.net/index.php3/stat/3/srodzaj/1/search/libGLU.so.1()(64bit) and install LibGLU 2) You have another version: to find out run: find / -name "libGLU.so*" -print Best Regards, Pedro Paulo JR 2008/6/24 Damia

Re: [Freesurfer] cortical thickness

2008-06-24 Thread Pedro Paulo de Magalhães Oliveira Junior
Hi, 1) It uses fsaverage cordinate system unless you have your own averege subject set. 2) It used log p value scale. I don`t think it make sense in QDEC to use mm. Best Regards Pedro Paulo Jr 2008/6/24 Feng-Xian Yan <[EMAIL PROTECTED]>: > Hi, >After I ran the qdec and analyzed my data(co

[Freesurfer] (no subject)

2008-06-24 Thread Damian Jenkins
I think this may have been something that other people have figured out, and I would be grateful to know how. In the past week if I try to run autorecon-2 it fails. Running each individual command that make up autorecon-2 it would seem that the error is with the final stage (-cortribbon). The m

[Freesurfer] cortical thickness

2008-06-24 Thread Feng-Xian Yan
Hi, After I ran the qdec and analyzed my data(cortical thickness). I have two questions. First, after I display a plot of the data for a particular vertex by left-clicking on a point while holding down the Ctrl key, it shows a plot and its plot window shows this vertex's surface coordinates. Wh