Re: [Freesurfer] recon-all times

2008-01-28 Thread Jiefeng Jiang
Re: [Freesurfer] recon-all timesHi everybody, Here is the results from my server: CPU-MODEL: 2 x Intel(R) Xeon(R) E5320 CPU-FREQ: 1.86GHz RAM: 12GB HD-type: SATA FREESURFER-VERSION:freesurfer-Linux-rh9-stable-pub-v4.0.1-full.tar.gz OS: Ubuntu 7.10 Processing-TIME: 29.5h for the subje

Re: [Freesurfer] Creating average overlays for time-varying data (MEG)

2008-01-28 Thread Pádraig Kitterick
A question related to this: is it possible to take a surface overlay (.w format) containing a set number of vertices, all with the same value, in one subject space and warp it to another subject while keeping the same number of vertices? I would like to try to define a set of source points on a

[Freesurfer] mris_wm_volume

2008-01-28 Thread Gallo, Antonio (NIH/NINDS) [F]
Hello All, We are trying to obtain an accurate measurement of the total WM volume (cerebral WM + WM hypointensities) in a group of patients with multiple sclerosis. As per Bruce's suggestion, we are using mris_wm_volume that should give more accurate measures than aseg.stats. When looking at our

Re: [Freesurfer] Problem make_average_subject

2008-01-28 Thread Nick Schmansky
Juergen, Edit the 'make_average_subject' script removing (or commenting-out) the line 'limit descriptors unlimited'. You may have to do the same for 'make_average_surface' and 'make_average_volume'. Although in v4.0, these should already be commented-out. Nick On Mon, 2008-01-28 at 16:29 +01

[Freesurfer] Problem make_average_subject

2008-01-28 Thread Juergen Haenggi
Dear FS experts I tried to run make_average_subject in the past with 92 subjects and got the following error: Cannot allocate memory. This is now on the to-do list of the FS website. Then I bought some additional RAM and changed from OS X tiger to leopard. Now I tried it again and get this error: