Re: [Freesurfer] wmparc/white matter problems?

2007-12-08 Thread Ryan Muetzel
Hi Doug, The white matter in aseg seems to follow the same pattern as the white matter in wmparc...it goes into the ribbon (through the white matter surface into gray matter). -Ryan On Dec 7 2007, Doug Greve wrote: Can you load and examine the aseg.mgz, {lh.rh}.ribbon.mgz? How do they lo

Re: [Freesurfer] ROI labels for geometry vertices

2007-12-08 Thread Bruce Fischl
Hi Sergey, here's read_annotation.m. It should also return the embedded colormap that's in the .annot file, including structure names. Not sure why it's not in your distribution. cheers, Bruce On Sat, 8 Dec 2007, Sergey Plis wrote: Thank you! Although I did not find the exact function you'r

Re: [Freesurfer] ROI labels for geometry vertices

2007-12-08 Thread Sergey Plis
Thank you! Although I did not find the exact function you're describing, there is a function with the same name that has the following help: >> help read_annotation [annots] = read_annotation(fname) reads a binary annotation file into a vector or this one >> help freesurfer_read_annota

Re: [Freesurfer] ROI labels for geometry vertices

2007-12-08 Thread Sergey Plis
Thank you! Although I did not find the exact function you're describing, there is a function with the same name that has the following help: >> help read_annotation [annots] = read_annotation(fname) reads a binary annotation file into a vector or this one >> help freesurfer_read_anno