[Freesurfer] Qdec covariates

2007-10-29 Thread Alexander Fornito
Hi all, If i run a model in qdec that inludes 1 discrete and 1 continuous factor, does the output for the group contrast covary for the continuous variable? For example, if I want to compare two groups, and include group as my discrete factor and age as a continuous factor, will the output for the

Re: [Freesurfer] old Mac ver.

2007-10-29 Thread Nick Schmansky
Greg, Freesurfer v4.0 can be used to visualize data produced with Freesurfer v3.0. Nick On Mon, 2007-10-29 at 17:10 -0400, Kirk, Gregory wrote: > Hi, > > I have a radiologist that wants to do some freesurfer work, > visualizing subcortical parcelations and orig and > T1 volumes. The volume pro

[Freesurfer] old Mac ver.

2007-10-29 Thread Kirk, Gregory
Hi, I have a radiologist that wants to do some freesurfer work, visualizing subcortical parcelations and orig and T1 volumes. The volume processing was done with freesurfer-v3.0. Can I install the current freesurfer-Darwin-tiger-stable-pub-v4.0.1-full.dmg and have it correctly visualize the volu

RE: [Freesurfer] freesurfer help

2007-10-29 Thread Paul Raines
imate_np_and_em (termination status=32512) ERROR: nu_correct Linux lr8to10-dhcp-131-112.bumc.bu.edu 2.6.18-8.1.15.el5 #1 SMP Mon Oct 22 08:32:04 EDT 2007 i686 i686 i386 GNU/Linux recon-all exited with ERRORS at Mon Oct 29 09:47:59 EDT 2007 __ NOD32 2623 (20071029) Information __ T

RE: [Freesurfer] freesurfer help

2007-10-29 Thread Pedro Paulo Oliveira Jr
6 GNU/Linux recon-all exited with ERRORS at Mon Oct 29 09:47:59 EDT 2007 __ NOD32 2623 (20071029) Information __ This message was checked by NOD32 antivirus system. http://www.eset.com ___ Freesurfer mailing list Frees

[Freesurfer] freesurfer help

2007-10-29 Thread Seth Elkin-Frankston
Hello, I'm running v.4.0.1 on CentOS 5. When attempting to run autorecon1 I receive the error below. Any help is appreciated. Thanks Seth Elkin-Frankston Iteration 1 Mon Oct 29 09:47:59 EDT 2007 nu_correct -clobber ./tmp.mri_nu_correct.mni.8422/nu0.mnc ./tmp.mri_nu_correc

[Freesurfer] FSfast tutorial

2007-10-29 Thread McLean John (NHS Greater Glasgow & Clyde)
Hi, I am trying to work through the FSfast tutorial. When i enter the following command: tkmedit-sess -s mgh-101.1 -a sm-gamma-fwhm5 -c odd-v-0 -aparc+aseg i get the following error: INFO: Found session in: ./mgh-101.1 grep: ./mgh-101.1/session.info: No such file or directory INFO: Found sessi