Re: [Freesurfer] Cortical surface contour plotting

2007-10-19 Thread Bruce Fischl
tkmedit finds ever triangle that intersects the viewing plane then computes the closed contour connecting them. Is that what you want? Bruce On Fri, 19 Oct 2007, XJ Kang wrote: Hi, I can get all the ponits of the cortical surface in ascii format. Anyway I can plot the contour of the 3D su

[Freesurfer] Cortical surface contour plotting

2007-10-19 Thread XJ Kang
Hi, I can get all the ponits of the cortical surface in ascii format. Anyway I can plot the contour of the 3D surface on a plane? I tried to find all the points in one plane, but the order is not along the contour line. I can only plot the surface as "dots", instead of "lines" in a 2D plane. I

[Freesurfer] thickness difference map

2007-10-19 Thread Wang, Xin
Hello, Group, We want to make a figure as Fig2 in Han X et al. 2006 reliability paper. Does anyone kindly share his/her way to make a map of difference in average thickness between two groups? Thank you in advance, Xin Wang ___ Freesurfer mailing

RE: [Freesurfer] Version 4.1 questions

2007-10-19 Thread Pedro Paulo Oliveira Jr
It´s 4.0.1 or 4.1? From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Kt Labadie Sent: sexta-feira, 19 de outubro de 2007 15:36 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Version 4.1 questions I have 2 questions related to version 4.1. 1) The ReconAllDevTable o

Re: [Freesurfer] Version 4.1 questions

2007-10-19 Thread Bruce Fischl
Hi KT, for 2) the usage changed, and you don't need to specify mri (i.e. -segmentation aseg.mgz). For 1), which new steps do you mean specifically? Bruce On Fri, 19 Oct 2007, Kt Labadie wrote: I have 2 questions related to version 4.1. 1) The ReconAllDevTable on the Martinos Center Freesur

[Freesurfer] Version 4.1 questions

2007-10-19 Thread Kt Labadie
I have 2 questions related to version 4.1. 1) The ReconAllDevTable on the Martinos Center Freesurfer Wiki is not updated to reflect the new steps in version 4.1.Does anyone have a breakdown of these new steps? I was not sure of the flags for these new steps, or where they fit in (are t