Re: [Freesurfer] Problem concerning maximum values from mri_volcluster

2007-09-24 Thread Doug Greve
Hi Dan, what version of FreeSurfer are you using? Dan Dillon wrote: Dear FreeSurfers,   I’m getting odd results from mri_volcluster—the max voxel listed for a given cluster often does not appear to actually be the max in that cluster. This most often appears to happen with s

Re: [Freesurfer] t-value saved values

2007-09-24 Thread Doug Greve
But while an F with J=1 gives the same p value as an unsighed t, the actual statistic will be F = t^2. Could this account for the discrepancy? Glenn Lawyer wrote: No, not at all sure. That is why I am asking. However, mri_glmfit says that the values should be t-values if there is only one row

Re: [Freesurfer] mri_convert: IMA

2007-09-24 Thread Nick Schmansky
try adding: --in_type siemens_dicom On Mon, 2007-09-24 at 14:41 -0400, Nurunisa Neyzi wrote: > Hi, > I am getting an error message while trying to convert the SIEMENS IMA > to MGZ: > > siemensRead(): file rows (30067) not divisible by image rows (18771) > > It looks like i managed to do a si

[Freesurfer] mri_convert: IMA

2007-09-24 Thread Nurunisa Neyzi
Hi, I am getting an error message while trying to convert the SIEMENS IMA to MGZ: siemensRead(): file rows (30067) not divisible by image rows (18771) It looks like i managed to do a similar conversion before, so I wonder if there is something I need to add to the command line for this special ca