Hi Paul,
yes, we know this happens - it's because of the way the manual training
set was constructed, so that it has voxels labeled cortex there that
shouldn't exist. The accumbens in general isn't all that accurate as it has
no real intensity signatures at its boundaries, so we don't use it a
p.s. sorry, I should have looked at the images first. Everything I said
still applies, but this looks worse than it should. If you put it one our
filedrop I'll take a look
On Wed, 24 Jan 2007, Paul Greenberg wrote:
Hello,
I'm having trouble getting an accurate subcortical segmentation (aseg.m
Thanks, Doug!
I made that rectangle mark on the forehead actually.
According to your suggestion, I tried
tkmedit test orig.mgz -overlay test_mark.img -overlay-reg reg.dat
The only mark that I could find is on the left side of the image in coronal view
and nothing in sagittal view. So there is s
In step 3, was the registration correct?
You can also try:
tkmedit test orig.mgz -overlay test_mark.img -overlay-reg reg.dat
the mark should be in the right place.
[EMAIL PROTECTED] wrote:
Hi all,
I got some problems when I tried to overlay some maps one brain surface. The
following ste
Hi all,
I got some problems when I tried to overlay some maps one brain surface. The
following steps is just for test.
1.recon-all -all -notalairach -i MP-rage/001.dcm s test
2.I use matlab to load the save dataset (MP-rage/001.dcm ~ 160.dcm)
and
then mark the back-head (>10
it will run them all again.
On Wed, 24 Jan 2007, Catherine Hartley wrote:
Hi,
If recon-all is interrupted after several hours of processing (someone
shutdown the machine), if I run recon-all again on the same set of data,
will it go through all of the processing steps again, or will it note th
Cate,
It will restart from the beginning. Making it behave like the 'make'
utility, which checks input and output file dates and file existence
before doing work, is a long-term goal for our recon-all, but not
anytime soon.
You can restart recon-all at particular stages by manually checking the
Hi,
If recon-all is interrupted after several hours of processing (someone
shutdown the machine), if I run recon-all again on the same set of data,
will it go through all of the processing steps again, or will it note the
progress made and essentially check through until it reaches the prior point
