[Freesurfer] version 3.0.2

Hello all, I'd like to know whether the good_output and bert, analysis were done on version 3.0.2? If so could anyone please pass me a link to that version? Thanks Chacko. Have a burning question? Go t

Re: [Freesurfer] talairach log file

I think the last one. They are different spatial scales, and I think the first set are on the gradient image, not the image itself. We haven't found this to be a terribly senstive measure of how well the talairach worked though On Fri, 8 Dec 2006, Paul Greenberg wrote: Hi all, In each subjec

[Freesurfer] talairach log file

Hi all, In each subject's /mri/transforms/talairach.log file, there are 6 instances of output for the "Final objective function value", which one reflects the quality of the final output? The last one? Thanks, Paul Greenberg ___ Freesurfer mailing

Re: [Freesurfer] Correcting Pial Surface

Hi Antonio, There were significant changes to FreeSurfer between January and May. You should definitely be editting on the brianmask.mgz volume and never on the brain.mgz What edits are you doing? What are you trying to accomplish? Which command are you running? and how is it not working? I'll

Re: [Freesurfer] question about mri_vol2surf

mri_vol2surf goes through two steps to map the functional to fsaverage. First, it maps to the subject's surface (it knows what this is because it has the subject's ID in the register.dat file). It then maps the subject's surface to fsaverage throught the sphere.reg created during recon-all. Again

[Freesurfer] question about mri_vol2surf

hi, i have been using mri_vol2surf to map individual functional data onto the fsaverage brain: mri_vol2surf --src 003/bold/03.time.intval.resam+orig.BRIK --src_type afni --srcreg 003/bold/register.dat --hemi rh --projfrac-avg 0 1 10 --trgsubject fsaverage --out 003/surf/03.time.intval.fsave.mgh

[Freesurfer] Correcting Pial Surface

Hi all, Regarding pial inaccuracies, should I edit brain.mgz or brainmask.mgz ? I'm asking this because it seems to me that correcting brainmask.mgz and running autorecon2 (-cp, -wm or -pial) doesn't seem to fix the problem. Furthermore, when I was going through the tutorials it suggests usin

[Freesurfer] Run Freesurfer on a supercomputer

Dear Freesurfer user because Freesurfer is so processor and memory intensive, we intented to run Freesurfer parallely on a supercomputer (called Matterhorn Cluster http://www.id.unizh.ch/dl/wissrechnen/HPC-Supercomputing-Main.html). Does Freesurfer is able to run on such a machine without modify