You're absolutely right - the siemens mosaic files return an error in mri_convert after osirix anonymises them, while the single siemens files do not. We've been using mri_convert for siemens DTI data, so weren't playing with mosaics.The dicom-rewriter plugin for ImageJ worked fine.On 29/08/2006, a
Hi Doug,
On 29. Aug 2006, at 00:27 Uhr, Doug Greve wrote:
Yes, that's fine. But with gammafit, you cannot use the ircor option
(it's only meant for FIR).
Aah, so, that is simple, no -ircorr at all ;). So the specification
for gammafit is done exclusively in mkanalysis-sess, nothing more?
One
Yes, that's fine. But with gammafit, you cannot use the ircor option
(it's only meant for FIR).
Sebastian Moeller wrote:
Hi Doug,
On 28. Aug 2006, at 23:55 Uhr, [EMAIL PROTECTED]
wrote:
Date: Mon, 28 Aug 2006 17:53:30 -0400
From: Doug Greve <[EMAIL PROTECTED]>
Subject: [Freesurfer] Re: ne
Hi Doug,
On 28. Aug 2006, at 23:55 Uhr, [EMAIL PROTECTED]
wrote:
Date: Mon, 28 Aug 2006 17:53:30 -0400
From: Doug Greve <[EMAIL PROTECTED]>
Subject: [Freesurfer] Re: newbie question event-related
To: Sebastian Moeller <[EMAIL PROTECTED]>
Cc: Freesurfer Mailing List
Message-ID: <[EMAIL PROTEC
Can't say we've had this problem when we select only the patient's name field for anonymising in the preferences. Will check again later today!On 29/08/2006, at 7:54 AM, Doug Greve wrote: We've had some problems with osirix in that it will strip off all the private fields. For siemens mosaics, the
why don't we have a single MatrixEigenSystem that checks what kind of
matrix it is and calls the appropriate one. The time for the check will
be negligible compared to the actual calculation
On Mon, 28 Aug 2006, Doug
Greve wrote:
Hi Sebastian,
are you using an FIR or gammafit?
doug
Sebasti
We've had some problems with osirix in that it will strip off all the
private fields. For siemens mosaics, these are necessary in order to
determine the number of slices and the image positions, etc.
Greig de Zubicaray wrote:
There's also Osirix on the Mac:
http://homepage.mac.com/ross
Hi Sebastian,
are you using an FIR or gammafit?
doug
Sebastian Moeller wrote:
Hi List, hi Doug,
for the first time I have now data, that realloy wants event-related
analysis (200ms stimulation every 10 seconds). Now, using a TER of 0.2
in the para-file and using "-dt event-related" in mkan
There's also Osirix on the Mac:http://homepage.mac.com/rossetantoine/osirix/Index2.htmland ImageJ has a plugin:http://rsb.info.nih.gov/ij/plugins/dicom-rewriter.htmlHaven't used the latter, but can vouch for the former!regards,GreigOn 29/08/2006, at 6:16 AM, Russ Poldrack wrote:You can use the LONI
Hi List, hi Doug,
for the first time I have now data, that realloy wants event-related
analysis (200ms stimulation every 10 seconds). Now, using a TER of 0.2
in the para-file and using "-dt event-related" in mkanalysis-sess.new
(3.0.3 pub x86_64 centos4) was the easy part, but what do I have t
there is a package for subject deidentification, which contains also
DICOM anonymizing.
http://www.na-mic.org/Wiki/index.php/MBIRN:BIRNDUP:Distribution
or another program for DICOM anonymizing:
http://eng.neologica.it/download/downloadDICOMAnonymizer.html
Silvester
Najmeh Khalili M. wrote
You can use the LONI deidentification debablet to do this:http://www.loni.ucla.edu/Software/Software_Detail.jsp?software_id=23cheersrussOn Aug 28, 2006, at 1:07 PM, Doug Greve wrote:Sorry, no clue.Najmeh Khalili M. wrote: sorry about nonstop posting!I'm trying to remove the patient names from dicom
Sorry, no clue.
Najmeh Khalili M. wrote:
sorry about nonstop posting!
I'm trying to remove the patient names from dicom files. I was advised
to use dcm_modify_elements but it fails on DCM_Openfile.
Is there a straight forward way of doing this?
Thanks
Naj
P.S. Doug, I am still looking fo
sorry about nonstop posting!
I'm trying to remove the patient names from dicom files. I was
advised to use dcm_modify_elements but it fails on DCM_Openfile.
Is there a straight forward way of doing this?
Thanks
Naj
P.S. Doug, I am still looking for the graddir tags :)
Which diom tags do you mean? I think we can get away with not having the
Patient Orientation (tag 20,20) -- I'm not sure why I required it in the
first place. ImagePositionPatient (tag 20,32) is considerably more
important as this is one of the ways the slices are sorted and the
direction cosin
Hi,
We have some old scans that were originally in ACR-NEMA format which
we have converted to DICOM. The problem is that they are missing both
the ImagePositionPatient and ImageOrientationPatient fields. Is
there anyway to use freesurfer without having these two fields? Based
on the post by Dou
Hm, I can't reproduce this.
So, you load up a volume, and repeatedly press an arrow key to scroll
through the slices? Or hold the button down?
On Mon, Aug 28, 2006 at 11:16:49AM -0500, Derin Cobia wrote:
> I've been experiencing some crashes/freezing using tkmedit lately, and
> have been able to
Derin,
Does the file .xdebug_tkmedit show any error messages
after a lock-up occurs? If so, can you send that file
to me? Another possibility is that the graphics driver
may need to be updated. Do you have an NVIDIA card?
Nick
> I've been experiencing some crashes/freezing using tkmedit late
I've been experiencing some crashes/freezing using tkmedit lately, and
have been able to reproduce it pretty reliably. It occurs when I scroll
through the slices of the subject either using the arrows keys or clicking
through on the toolbar. It happens when viewing a variety of volumes
(brainmask
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