[Freesurfer] source of thickness information for mris_preproc

Hi, When one runs mris_preproc with e.g. -meas thickness, does it get the thickness information from the files in the stats directory within each subject's directory - or from the ?h.thickness files under the surf directories?   Thank you!-- yours,LMR

Re: [Freesurfer] freesurfer movies

Hi Thomas, this is pretty old stuff, I'm surprised it works at all anymore. You're better of just saving a sequence of .tif files and using standard tools to create movies (e.g. "convert" under Linux, which I think can make .mpg movies) cheers, Bruce On Thu, 20 Jul 2006, Thomas Stephan wrot

Re: [Freesurfer] recon-all error

Please send the entire log file. [EMAIL PROTECTED] wrote: Hello, I received an error when running recon-all. It seems to have run into a problem during the 'Remove Neck' and 'SkullLTA' steps. I have included the output below of the last two steps before the error occured. Thank you. -Surina

[Freesurfer] recon-all error

Hello, I received an error when running recon-all. It seems to have run into a problem during the 'Remove Neck' and 'SkullLTA' steps. I have included the output below of the last two steps before the error occured. Thank you. -Surina [EMAIL PROTECTED] Remove Neck Wed Jul 19 15:26:17 EDT 2006

[Freesurfer] freesurfer movies

Dear List, I used tksurfers 'make frame' button to save frames to a movie. What type of movie file is generated by this function, and which viewer or converter could I use to see or convert it? Best regards Thomas -- == Dr.

Re: [Freesurfer] error nu_correct

Stefan, Centos4 on VMWare on WindowsXP? Sounds interesting, and hope it can be made to work. What if you type: nu_correct Does it return something like this? nu_correct, version 1.10 Usage: nu_correct [-help] [options] in.mnc out.mnc If not, then please send me the error message. nu_

Re: [Freesurfer] eTIV on older recons

Hi David, we really haven't spent much time verifying the eTIV stuff, so I would consider it not-ready-for-primetime at the moment. sorry, Bruce On Wed, 19 Jul 2006, David Ziegler wrote: Hello All! I'm trying to calculate eTIV (ICV) based on the new Buckner method, but for reconstruction

[Freesurfer] error nu_correct

Hi freesurfers, the script crashed when running "recon-all -s bert -all" to test a newly installed CentOS 4 version (v3.0.3) on a Windows XP system with VMware and Fedora Core 4. The path for both nu_correct (and nu_estimate_np_and_em: see second error message) seem to be correct (/mnt/d/Freesurfe