Nick,
After running uname -m it says i686.Bit if it's a
64-bit build of freesurfer how come it ran all the
other steps on my 32-bit machine?
Chacko.
--- Nick Schmansky <[EMAIL PROTECTED]> wrote:
> Chacko,
>
> The 64bit build of freesurfer will not run on a
> 32bit machine. Do you
> have an old
Hi,
Is it possible to convert register.mnc files to register.dat files or
are they incompatible?
I am trying to use register -rgb instead of tkregister to register
functional data to anatomical data.
Thanks!
Jeremy
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Fre
Chacko,
The 64bit build of freesurfer will not run on a 32bit machine. Do you
have an older version of freesurfer that might be running? What is the
output of:
cat $FREESURFER_HOME/build-stamp.txt
Are you sure your machine is really 32bits? Run 'uname -m' and if the
machine is 64bits, it wi
Nick,
Im just running one sample of an Analyze format
image..freesurfer is installed on a Linux OS Centos4
platform..but its a 32-bit machine.
the sample bert is displayed correctly...
im using tksurfer to display lh.orig and rh.orig..
Nick,could this be the problem..im using a 32-bit
machine but i
Chacko,
What freesurfer distribution is being used and what platform is it
installed upon?
In tksurfer, does the sample subject named 'bert' display correctly?
I guess I don't know what you mean by not tesselating correctly and not
displaying the volume correctly. What tool is being used to dis
No, the nofix surfaces are also displaying just a
small piece of the surface..similar to the ?h.orig
surfaces.
--- Bruce Fischl <[EMAIL PROTECTED]> wrote:
> hmmm, looks okay. Can you see the ?h.orig.nofix
> surfaces okay?
> On Thu, 22
> Jun 2006, Chacko Cherian wrote:
>
> > --- Bruce Fischl <[
hmmm, looks okay. Can you see the ?h.orig.nofix surfaces okay?
On Thu, 22
Jun 2006, Chacko Cherian wrote:
--- Bruce Fischl <[EMAIL PROTECTED]> wrote:
can you send us the recon-all.log file?
On Thu, 22 Jun 2006, Chacko Cherian
wrote:
yes the filled.mgz is fine...with the hemispheres
distinc
can you send us the recon-all.log file?
On Thu, 22 Jun 2006, Chacko Cherian
wrote:
yes the filled.mgz is fine...with the hemispheres
distinctly labelled and no cerebellum.
--- Bruce Fischl <[EMAIL PROTECTED]> wrote:
and does the filled.mgz look correct? Are the
hemisphere separately
labeled
yes the filled.mgz is fine...with the hemispheres
distinctly labelled and no cerebellum.
--- Bruce Fischl <[EMAIL PROTECTED]> wrote:
> and does the filled.mgz look correct? Are the
> hemisphere separately
> labeled and the cerebellum gone? Also, please post
> these to the list so
> other people
when you load it in tkmedit does it display properly? That is, is the
coronal view really coronal?
On Thu, 22 Jun 2006, Chacko Cherian wrote:
Hello all,
I ran an Analyze format image in Fresurfer...just the
Morphometry and reconstruction tutorial..but found
that it's creating a filled.mgz volum
Hello all,
I ran an Analyze format image in Fresurfer...just the
Morphometry and reconstruction tutorial..but found
that it's creating a filled.mgz volume but I'm having
a problem in tesselating and creating the outputs
lh.orig and rh.orig for the left and right
hemispheres.It displays a very tiny
Tao,
Which freesurfer distribution was installed, and on what kind of platform?
Was there an MNI installation already on the system and are there
environment variables pointing to it? In particular, what are
MNI_DATAPATH and MNI_PERL5LIB and PERL5LIB set to in your environment?
They should poin
Hi Tommi,
there is no corresponding 3D volume for the surface averages. You could
look at the talairach average, or you could see if Doug has finished the
tools for building volume averages from the nonlinear volume morph.
cheers,
Bruce
On Wed, 21 Jun 2006 [EMAIL PROTECTED]
wrote:
Hi Fr
yes, they will be included in the aseg.stats, but we don't use the
cortical volumes from the aseg - we recommend using the surfaces instead,
which are quite a bit more accurate, so it shouldn't matter.
Bruce
On Thu, 22 Jun
2006, Inge K. Amlien wrote:
As seen in the attached image, voxels ou
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