RE: [Freesurfer] Tutorial data

2006-05-22 Thread Inge Kasbohm Amlien
That's great Nick, thanks. /Inge -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: 23. mai 2006 00:44 To: Inge Kasbohm Amlien Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] Tutorial data Inge, Funny you should ask. We are busily updating this data right no

Re: [Freesurfer] Tutorial data

2006-05-22 Thread Nick Schmansky
Inge, Funny you should ask. We are busily updating this data right now in preparation for an upcoming Freesurfer course. The data should be posted for download by the end of the week (along with an updated tutorial wiki). We'll post to this mailing list when it is ready. However, the existin

[Freesurfer] Tutorial data

2006-05-22 Thread Inge Kasbohm Amlien
I read a while back the tutorial data had been reprocessed with version 3.0, but not uploaded yet. Is the new data uploaded now? If so, is this the correct dataset for the morphometry and reconstruction tutorial? ftp://surfer.nmr.mgh.harvard.edu/pub/dist/buckner_data-tutorial_subjs.tar.gz (The dat

Re: [Freesurfer] Parcellation

2006-05-22 Thread Nick Schmansky
Satra, The wiki page for cortical parcellation is found here: https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation A wiki page describing the steps in building an atlas for subcortical segmentation (aseg) does not yet exist. If you like I could help you create one and write it :) I'v

Re: [Freesurfer] Parcellation

2006-05-22 Thread Doug Greve
In answer to #1, yes. The number codes are in FreeSurferColorLUT.txt Satrajit Ghosh wrote: 1. Is aparc+aseg.mgz supposed to contain the parcellated volume from subcortical and cortical parcellations? 2. We have manually parcellated volumes of the cerebellum. Is there a way we can incorporate

Re: [Freesurfer] ab blocked design analysis

2006-05-22 Thread Doug Greve
Try avb Tom Bayer wrote: OK. I ended up using sfa-sess to save time at the command line. Now how do I run pain-sess on abblocked data? It requires that I input a contrast. -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 In order