RE: [Freesurfer] New average subject and stable release, v3.0

2006-03-16 Thread Doug Greve
No. On Thu, 16 Mar 2006, Goldman, Aaron (NIH/NIMH) [C] wrote: Hi, Is the fsaverage folder used when I run recon-all -all? Thanks, -Aaron- -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Monday, March 06, 2006 6:13 PM To: [EMAIL PROTECTED]; Freesurfer Mailing Li

Re: [Freesurfer] Faster and Parallel recon-all

2006-03-16 Thread Daniel Goldenholz
Ah. Silly me, I didn't notice the -log and -status options. Thanks Nick. I have now included those into my super-recon script as well. Problem solved. (if you have seen my script already, you may need to hit RELOAD on your browser to see the new version) Daniel Nick Schmansky wrote: The

Re: [Freesurfer] Faster and Parallel recon-all

2006-03-16 Thread Daniel Goldenholz
Nick I completely agree with you. However, I didn't want to edit recon-all itself, since it has this funny tendency to change from time to time. If there is a way to get those logs separated somehow, it would be a good thing. What about redirecting stdout to a hemisphere specific file? Will tha

RE: [Freesurfer] New average subject and stable release, v3.0

2006-03-16 Thread Goldman, Aaron (NIH/NIMH) [C]
Hi, Is the fsaverage folder used when I run recon-all -all? Thanks, -Aaron- -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Monday, March 06, 2006 6:13 PM To: [EMAIL PROTECTED]; Freesurfer Mailing List Subject: [Freesurfer] New average subject and stable release, v3

Re: [Freesurfer] Faster and Parallel recon-all

2006-03-16 Thread Nick Schmansky
The script looks good. The one thing it needs though is for the right and left hemi steps to log to separate files, otherwise output to recon- all.log will be interleaved, making debugging impossible. On Thu, 2006-03-16 at 12:15 -0500, Daniel Goldenholz wrote: > Ooops. I sent the below with the w

[Freesurfer] Faster and Parallel recon-all

2006-03-16 Thread Daniel Goldenholz
Ooops. I sent the below with the wrong subject tag. Here it is again: Daniel Goldenholz wrote: Freesurfers I was hoping someone else would do this, but well, it seems that no one did. So I went ahead and made this myself. Amusingly, I don't NEED to reconstruct any brains right now, so I don'

Re: [Freesurfer] Freesurfer & SuSE Linux

2006-03-16 Thread Henry Luetcke
Title: -- I am running the stable version 3 for RH9 on SuSE 10 here and it appears to work fine. Are there possibly any subtle problems that have so far escaped my notice? Henry Venkat subramanian wrote: Dear Freesurfer Experts,   Could youplease clarify whether the new freesurfer s