[Freesurfer] Re: two functions location

2006-03-01 Thread Doug Greve
It's in the most recent dev release Joongnam Yang wrote: Hi, "mris_preproc" and "mri_glmfit" These two functions are not included in the version of Freesurfer that I have. Does anyone know where I can get them? Nam. -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Numb

[Freesurfer] two functions location

2006-03-01 Thread Joongnam Yang
Hi, "mris_preproc" and "mri_glmfit" These two functions are not included in the version of Freesurfer that I have. Does anyone know where I can get them? Nam. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/ma

Re: [Freesurfer] mri_convert documentation error

2006-03-01 Thread Doug Greve
I think this has been fixed. BTW, be very careful changing the orientation describtion. Note that it is the description that is being chaanged, NOT the pixel data. If your pixel data were oriented one way and the description was correct, changing the description will make the description wron

[Freesurfer] mri_convert documentation error

2006-03-01 Thread Johannes Klein
Hi folks, There's a small bug in the online help for mri_convert I found when trying to get my input Nifti's left/right to match with freesurfer conventions. When run without any parameters, the last paragraph describes the use of the --in-orientation switch. That must read --in_orientation (pr

Re: [Freesurfer] Help!

2006-03-01 Thread Doug Greve
yanxia wrote: Dear All, I am a new user of FreeSurfer. I have two questions: 1> Is there a way to convert FreeSurfer surface files to Analyze format? I use 'tkmedit bert brain.mgz lh.pial' to view the image with the surface bounday, and hope that I can save the image and the surface bound

Re: [Freesurfer] Help!

2006-03-01 Thread Bruce Fischl
Hi Yan, mri_convert should be able to convert back and forth, just based on extension. mri_convert brain.mgz brain.img and mri_convert brain.img brain.mgz should both work. Try loading the .img in tkmedit and see if it displays properly cheers, Bruce On Wed, 1 Mar 2006, yanxia wrote: D

[Freesurfer] Help!

2006-03-01 Thread yanxia
Dear All, I am a new user of FreeSurfer. I have two questions: 1> Is there a way to convert FreeSurfer surface files to Analyze format? I use 'tkmedit bert brain.mgz lh.pial' to view the image with the surface bounday, and hope that I can save the image and the surface boundary with Analyze f

[Freesurfer] FreeSurferEnv.sh problems

2006-03-01 Thread Sebastian Moeller
Dear All, my copy of freesurfer-Linux-centos4_x86_64-dev20060224-full contains a small error in the file FreeSurferEnv.sh. In line 155 "export =$MNI_INSTALL_DIR/data" should read "export MNI_DATAPATH=$MNI_INSTALL_DIR/data". Ahoi Sebastian "friend of bash" Moeller -- Sebastian Moelle