Hi Reza,
I need more information that you have supplied. Please look over the instructions in surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
thanks
doug
Reza Rajimehr wrote:
Hi,
In the FS-FAST analysis stream (dev environment), I used autoreg-sess
command as follows:
autoreg-sess -s mv
Hi Kevin,
I tried this alterate command, however, the main window continues to
display the orig surface, given
tksurfer -subjid rh orig
It doesn't automatically update the view for the new data in $field.
Using the 'UpdateAndRedraw' command and the 'redraw' commands do not
change the surf
Dear Bruce etal,
Let's say we have a list of Talairach coordinates from a database of
fMRI results, in a text file. Can we create a tcl script to read those
values and then find the nearest surface point for any subject to each
xyz Talairach value? The tcl script should just return a list o
Hi Kevin et al,
it's great to have these options for scripting.
I want to loop over subjects. Will read_surface_vertex_set work in this
context? I can't see that it provides a way to change the subjid. I'm
trying to do this:
##
# BEGI
Hi Gabe,
What version of freesurfer are you using? The -autorecon-all,
-autorecon1, and -i flags should work with a current version - but are
relatively new. If you are using an older version these flags will not
work.
Could you also send the specific command line and error message you are
Hello,
I am new to using freesurfer. I have installed it successfully and am
attempting to go through the tutorial. The tutorial seems to be out of
date. I am at the "Data Conversion" step of the tutorial with the
tutorial_subjs directory from the gzipped buckner_data tarball. If I try
to ru
Hi,
In the FS-FAST analysis stream (dev environment), I used autoreg-sess
command as follows:
autoreg-sess -s mvp022106 -df df.txt
It successfully generated a register.dat file in the bold directory. Then
I used tkregister-sess as follows:
tkregister-sess -s mvp022106 -df df.txt -rsd t1epi
Whe
Sorry, there's no way to change the resolution of the TIFF
images. However, we don't supersample when taking screen shots, so
just make the window as big as you can, take the TIFF, and then you
can use an image conversion program to change the DPI.
I don't think you want to use read_binary_surf.
I have some path problems when using tksurfer, eg
dnlweber:/data/freesurfer/subjects> tksurfer -ucsf_cj rh inflated
surfer: current subjects dir: /home/dweber/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer:
Hi Daniel et al.,
thanks for the rotate and save_tiff script. I've installed the dev
version (redhat 9 download onto Debian sarge) and the script works
well. I would like to set the resolution of the .tif output files (eg,
600 dpi), can we do that?
I have a problem when using a label in t
Sebastian,
Which platform are you running the centos4_x86_64 release upon?
Also, can you send me the output of this command:
ldd `which tkregister2`
Also, if not running on a 64bit Centos4 platform, then you could attempt
the following:
cd $FREESURFER_HOME/lib
mv tcltktixblt backup-tc
Hmmm, I have not seen anything like this around here. Does it only
happen with your monkey data? What are the sizes of the volumes you are
trying to run? Can you send all your command lines?
doug
Sebastian Moeller wrote:
Aloha fellow Surfers,
while testing the dev20060224 centos4_x86_64 rel
Aloha fellow Surfers,
while testing the dev20060224 centos4_x86_64 release I stumbled upon
some issues with tkregister2. That is tkregister2 produces X errors
leading to a black screen once the image window is clicked into.
Since I try to cheat monkey data into the freesurfer chain I use
tkre
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