Hi Bruce etal,
I would like a short tcl script to rotate each hemisphere through all the main
views (lateral, medial, dorsal, ventral, anterior, posterior) and output a
graphics file with the name of the subject and the view in the file name. I've
found rotate_brain_[xyz] and save_rgb, but th
I have been working on this, but, as Bruce mentions, I'm not sure we're
doing it in the best way. If you want to test it out, you'll have to
re-run the contra registration with the newest (ie, as of Sunday)
recon-all (-contrareg).
You can then use mri_surf2surf and mri_label2label to map acr
Hi Darren,
I think Doug has some tools for this, although we haven't put much effort
into the ipsi/contra registration procedure, so I would take it with a
grain of salt. I think we'll get to it one of these days, but not within
the next few weeks.
cheers,
Bruce
On Tue, 21 Feb 2006, Darren
Hi Bruce etal.,
I have a label defined for the rh. Is there a way to automatically
locate this label in the homologous lh location, using the surface
coregistration methods of freesurfer?
Best, Darren
--
Darren L. Weber, Ph.D.
Visiting Postdoctoral Scholar
Dynamic Neuroimaging Laboratory
One way to do it is with:
mris_ca_label -ml-annot gcs icoorder annot
gcs = lh.atlas2002_simple.gcs
icoorder = 7
annot = lh.atlas2002_simple.annot
You can then load it onto an averaeg subject (such as average7) just like any other annotation. We are building this into the scripts that make the
The documentation is wrong, it should be --in_ and --out_ (note the
underscore, not the dash).
But, read the rest of the documentation carefully and make sure this is
going to do what you want it to do. It will NOT change the pixel data.
It only changes the description of the geometry of the F
