I am sorry:
Mris_anatomical_stats..
Francesca Bagnato, MD
NIB-NINDS-NIH
10 Center Drive
Building 10, Room 5B16
Bethesda, MD, 20892
USA
ph #: 001-301-402.6391
fax #: 001-301-402.0373
-Original Message-
From: Doug Greve [mailto:[EMAIL PROTECTED]
Sent: Wednesday, January 18, 2006 6:25 PM
T
we don't have an mris_stats. What do you mean?
Bagnato, Francesca (NIH/NINDS) [F] wrote:
Dear Users:
I would like to know which is the name of the file (and its location)
where all he results end up after the mris_stats...
Thanks,
francesca
Francesca Bagnato, MD
NIB-NINDS-NIH
10 Center Drive
Dear Users:
I would like to know which is the name of the file (and its location)
where all he results end up after the mris_stats...
Thanks,
francesca
Francesca Bagnato, MD
NIB-NINDS-NIH
10 Center Drive
Building 10, Room 5B16
Bethesda, MD, 20892
USA
ph #: 001-301-402.6391
fax #: 001-301-402.0373
p.s. thanks to Xiao Han for writing up a wiki page on this:
https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki/SurfaceNormal
On
Wed, 18 Jan 2006, XJ Kang wrote:
Hi,
Anywhere in the "surf" directory I can find the normal direction of each node
on the GM/WM surface? Or anyway I can cal
I've also just modified mri_surf2surf to extract the surface normals at
each vertex. You can get the new version from:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2surf
There's an example in the --help on how to run it.
doug
Bruce Fischl wrote:
sure. You can co
no problem
On Thu, 19 Jan 2006, Fornito, Alexander wrote:
It was a bug at our end. Sorry!!
Alex Fornito
M.Psych/PhD (clin. neuro.) candidate
Melbourne Neuropsychiatry Centre and Department of Psychology
The University of Melbourne
[EMAIL PROTECTED]
From: Bruc
It was a bug at our end. Sorry!!
Alex Fornito
M.Psych/PhD (clin. neuro.) candidate
Melbourne Neuropsychiatry Centre and Department of Psychology
The University of Melbourne
[EMAIL PROTECTED]
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Tue 17/01/2006 11:42
if you have the surfaces loaded you can load the annotation into tkmedit
directly (or tksurfer for that matter)
On Wed, 18 Jan 2006, Antao Du wrote:
Hi Bruce,
Yes, I used new freesurfer and I can get the cortical thickness in
entorhinal cortex. But one control subject had very small entorhina
Hi Bruce,
Yes, I used new freesurfer and I can get the cortical thickness in
entorhinal cortex. But one control subject had very small entorhinal volume,
therefore, I want to check the bourdary of entorhinal cortex during the
surface measurement. Do you know how to display it?
Thanks,
Antao
>
Hi Antao,
if you are using the new FreeSurfer, there will be a ?h.aparc.annot file
for each hemi (from Rahul Desikan and Ron Killiany's recently accepted
paper), and entorhinal is one of the parcellation units in it.
cheers,
Bruce
On Wed, 18 Jan 2006, Antao Du wrote:
Hi, I am interested
Hi, I am interested in measuring the cortical thickness in entorhinal
cortex. I can display the thickness measurement by " tkmedit AD1232
brain.mgz lh.white " to look at the measurement in entorhinal region, but I
don't know the boundary of entorhinal cortex by this way. Is there any way
that I can
sure. You can convert the surface into ascii with mris_convert or load it
directly into matlab with read_surf. The normal is then the cross product
of two of the legs of each triangle. Sorry, I don't remember the ordering
but it should be obvious if you have it wrong. The indices of the vertices
Hi,
Anywhere in the "surf" directory I can find the normal direction of each
node on the GM/WM surface? Or anyway I can calculate the normal
direction from the surface files? How about the direction between the
correspoding two points on the GM/WM surface and pial surface? Thanks.
XJ Kang
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