RE: [Freesurfer] Defining one's own atlas in FreeSurfer

2005-12-19 Thread Fornito, Alexander
Hi Bruce, I;d like to take up your offer of sending a subject with the annot file, as I'm quite stuck. Where can I upload it to? I can't seem to find the link on the wiki. Also, I only retained the mri, surf, and label subdirectories, although the tar is still quite big (~125 MB). Are there spec

Re: [Freesurfer] unpacking multiecho data

2005-12-19 Thread Bruce Fischl
Hi Eliz, you can convert them to .mgz with: mri_convert -nth ${echo} mef_echo${echo}.mgz where $echo runs from 0 to 7 for Andre's standard multi-echo sequence. cheers, Bruce On Mon, 19 Dec 2005, Elizabeth Fenstermacher wrote: I was wondering if there was a center standard for how multiec

[Freesurfer] unpacking multiecho data

2005-12-19 Thread Elizabeth Fenstermacher
I was wondering if there was a center standard for how multiecho data should be 1) unpacked 2) the individual echo sequences parsed out Thanks! Eliz ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/

Re: [Freesurfer] Re: mk-fieldsign

2005-12-19 Thread Jane Aspell
Hi I am still having problems with mk-fieldsign even after installing a new version of freesurfer and making various changes to libraries etc. when i run; "paint-sess -sf sessid -a rtopy -hemi rh" i get the error below: tksurfer: run tcl script: mk-fieldsign.tcl couldn't read file "mk-fieldsign.t