Re: [Freesurfer] problems with process volume

Hi Hengameh, sorry, I don't understand most of these questions. We don't have an official release of the hippocampal segmentation software yet, although our development version can be downloaded, which contains the subcortical (including hippocampus) segmentation. What do you mean by "slide

Re: [Freesurfer] request for guide (fwd)

yes, they need to subscribe at the surfer.nmr.mgh.harvard.edu website On Fri, 18 Nov 2005, Xiao Han wrote: I am forwarding Hengameh's questions to the list since I am not sure about the answers and somehow she couldn't send emails to the list (do people need to subscribe to the list first?

[Freesurfer] problems with process volume

Hello I have three problems with FreeSurfer software. 1- I don't know how to segment the hippocampus with FreeSurfer software. For this reason i segmentated the hippocampus with another software (MRIcro) and then gave these slides to FreeSurfer software for measuring volume of hippocampus. T

[Freesurfer] request for guide (fwd)

I am forwarding Hengameh's questions to the list since I am not sure about the answers and somehow she couldn't send emails to the list (do people need to subscribe to the list first?). Please help if you know the answers to her questions. Thanks, -Xiao

Re: [Freesurfer] libs?

Antao, Which platform release of Freesurfer did you install? The dev rh9 release or the dev centos4 release? I think for the Fedora 4 platform, you will want the dev centos4 release, which uses the libstdc++.so.6 libs. Nick > Hi, > > I installed freesurfer in a new machine (Fedora 4) and when

[Freesurfer] trouble with seq.info, solved

Hi All, I just squashed a most embarrassing error in my sequence naming. The open encoding of the used TR in the protokollname (i.e. mak_epi_TR4) classed with the cheking code in mkanalysis-sess.new. There the grep for "TR" returned not only the TR line out of the seq.info file, but also the

[Freesurfer] libs?

Hi, I installed freesurfer in a new machine (Fedora 4) and when I run -skullstrip, an error message appeared as the following. It seems a error from a library libstdc++.so.5. In this machine, libstdc++.so.6 exists. Can someone tell me how to fix the problem Thanks, Antao [EMAIL PROTECTED] subj

Re: [Freesurfer] Tksurfer tcl script LoadCurvature

On Thu, Nov 17, 2005 at 03:51:01PM +0100, Henry Luetcke wrote: > is there a tcl-script command for loading a curvature file in tksurfer? It depends what version you're using, but if it's relatively recent: set curv FILE_NAME read_binary_curv; > If yes, what is it and what is the syntax?

Re: [Freesurfer] retinotopy and FsFast

you should be running everything fromt the study dir. Often, your study dir is also the parent to the sessions. When it is not, then you need to supply a -d sesspar or -df sessparfile doug Jane Aspell wrote: Ok, thanks. It seems that the problem with finding the session came about becau

Re: [Freesurfer] retinotopy and FsFast

Ok, thanks. It seems that the problem with finding the session came about because I was running 'sfa-sess' from the 'MYSTUDY' study directory when it seems i should have run it from the 'session parent' directory. cheers, Jane In message <[EMAIL PROTECTED]> Doug Greve <[EMAIL PROTECTED]> writes: