Hi Goulven,
There should be a recon-all.log file under the
$SUBJECTS_DIR/subject/script/
directory, if you processed the data using the "recon-all" script.
The log files you attached were produced by the tools to visuallize the
results, not by the programs that create the label result. Thus we
Hi,
I was just wandering what determines the area value assigned to a given vertex.
Is it the average area of the faces of the triangles to which it is attached?
If so, what determines the area of the traingle faces?
Do the values in the ?.area file reflect regional variations in surface area?
I'
Hi Goulven,
can you send the recon-all.log file for one of these subjects? What
version of freesurfer are you using?
Bruce
On Thu, 3 Nov 2005, Goulven Josse
wrote:
On Nov 3, 2005, at 10:59 AM, Doug Greve wrote:
To eliminate the possibility of a SUMA/FreeSurfer incompatibility, can you
Peggy,
I've added a link to a page that contains a snapshot of the tutorial.
Look for the last link on this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial
The PDF version isn't the greatest doc in existence (in terms of
formating), but the material and pictures should be sufficient.
To eliminate the possibility of a SUMA/FreeSurfer incompatibility, can
you send pics displayed in tksurfer? Also, to clarify, this is a label
for a subject shown on that subject (ie, you did not map the label from
one subject to another)?
thanks
doug
Goulven Josse wrote:
Hi,
I attac
Well, if the volumes do not line up, then you're register.dat is wrong.
Use tkregister2 to register the original functinoal to the anatomical
(use the --regheader the first time), then use mri_vol2vol to resample
the functional into anat space (make sure to use the --invxfm flag with
vol2vol)
Hello,
on behalf of a collegue who has not yet registered for the freesurfer
mailing list I want to send you the questions below.
Thanks for your help
Claus
---
Hi,
we are currently trying to spatially transform functional d
Would you consider providing a .pdf version of the web document
"FreeSurfer Tutorial: Morphometry and Reconstruction" that could be
easily downloaded and printed out? We occasionally teach a FS class
here at the NIH and I know it helps to have a paper-version of the
manual to refer to (which i
Hi Goulven,
could you send us an image with some arrows on it?
cheers,
Bruce
On Wed, 2 Nov 2005,
Goulven Josse wrote:
Dear Freesurfers,
We have used the automated parcellation (Fischl et al, 2004) in several
subjects and noticed in some cases labeling of the lateral part of a gyrus (i
mea
