[Freesurfer] Re: tkregister problem

2005-07-22 Thread Doug Greve
For the over-saturation, you can adjust the brightness with the fmov entry box. You can also click in the image window and hit 'i' to toggle the automatic intensity normalization. We'll have to wait until I'm back in the office next week to look at the tksurfer problem -- unless Kevin can look at

Re: [Freesurfer] mgz file format?

2005-07-22 Thread greve
It is the same thing as mgh, just compressed. Do you have the docs for mgh format? If not, you can check out the mgh_read.m in freesurfer/matlab doug > Bruce: > > Could you point to where mgz format is documented somewhere? Thanks, > > Graham > > At 7/21/2005 09:40 PM, you wrote: >>Hi Renat, >>

[Freesurfer] tkregister problem

2005-07-22 Thread Tamara Knutsen
for data acquired using the multiecho sequence and undistorting it using anders' program, i get oversaturated images in the tkregister program, making it impossible to register to the anatomical. however i took other in-session functionals that i can use to register successfully. but if i cop

Re: [Freesurfer] Tksurfer: Unable to view .orig file

2005-07-22 Thread Bruce Fischl
Hi Arvind, it's the middle of the FSL/FreeSurfer course, so we're all really busy. Hopefully we'll get to it next week. Bruce On Thu, 21 Jul 2005, Arvind Gururajan wrote: Hi, Could anyone please tell me what could be wrong? What more information do I need to provide? Your help will be rea