[Freesurfer] Segmentation error

Hi, When running segment_subject, I get a meesage saying THE SEGMENTATION IS PROBABLY NOT CORRECT at the validation stage. Any hints as to what might be causing this and how to fix? Thanks, Alex ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.

FW: [Freesurfer] Appropriate post-editing processing

-Original Message- From: Fornito, Alexander Sent: Tue 5/17/2005 12:51 PM To: Bruce Fischl Cc: Subject: RE: [Freesurfer] Appropriate post-editing processing For lh.white and lh.pial it is: eul

Re: [Freesurfer] Appropriate post-editing processing

what is the euler number? It should be 2 in all cases - you shouldn't have to edit to get a topologically correct surface. In some cases it was 1 or 0, but Florent fixed those problems a while ago, so if you have an up-to-date version of mris_fix_topology it should be 2. cheers, Bruce On Tue, 1

[Freesurfer] Appropriate post-editing processing

Hi all, I've created the final surface on one of my images and noticed that mris_euler_number has detected defects. I've gone back to edit what i think is the problem and was wandering if I need to go through the whol process again (create surface -> Fix topology correction -> Create final surfa

RE: [Freesurfer] create_subject usage

Sorry, was thinking of someting else. That helps - thanks! -Original Message- From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Mon 5/16/2005 9:40 PM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cr

Re: [Freesurfer] create_subject usage

You can also use recon-all-nmr, which allows you to select a hemisphere (and does a lot of other neat things). Run with -help to get loads of docs. doug On Mon, 16 May 2005, Bruce Fischl wrote: inflate_subject also runs mri_fill, which is before the split into hemispheres. If you have already don

[Freesurfer] flattening with "folded" brain cuts

Hi all, Freesurfer allows occipital cuts of "inflated" brain to be flattened. Is it possible to flatten occipital cuts of "folded" brain? Nam. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

Re: [Freesurfer] create_subject usage

p.s. I don't know what create_subject is On Mon, 16 May 2005, Fornito, Alexander wrote: Hi, Does anyone know if its possible to use options with create_subject and inflate_subject in the command line (eg., one hemisphere only). I've been unable to bring up the usage (e.g, -u or -help). Thanks,

Re: [Freesurfer] create_subject usage

inflate_subject also runs mri_fill, which is before the split into hemispheres. If you have already done this you can run inflate_subject-?h. cheers, Bruce On Mon, 16 May 2005, Fornito, Alexander wrote: Hi, Does anyone know if its possible to use options with create_subject and inflate_subject