Re: [Freesurfer] Error running recon from command line

looks like you don't have the MNI talairach software installed. Bruce On Wed, 23 Feb 2005, Harshad Shanbhag wrote: Hello, I installed FreeSurfer according to instructions on the website. To overlay FSL data, I used the following instructions from the FMRIB website. avwswapdim TEST x -z y TEST_reo

[Freesurfer] Error running recon from command line

Hello, I installed FreeSurfer according to instructions on the website. To overlay FSL data, I used the following instructions from the FMRIB website. avwswapdim TEST x -z y TEST_reorient slices TEST_reorient bet TEST_reorient TEST_brain -f 0.4 mri_convert /home/bbernal/freesurfer/subjects/TEST/m

[Freesurfer] Cortical thickness correlated with age

Hi everybody, for quite a while we have been comparing the cortical thickness between groups of patients and I hope we did everything as we should. Now, we have been trying to look for the correlation between cortical thickness and age and somewhere we seem to make a mistake. I know that it's diff