You can tell recon-all not to touch the talairach.xfm file by adding
-notalairaach to the command-line
doug
On Thu, 6 Jan 2005, Joongnam Yang wrote:
Thanks Bruce,
How would I specify the new talairach.xfm in the run of recon-all -stage1.
If I copy the new file into the usual /mri/transforms directo
part of this code is to use the coordinate system that David van Essen has
been advocating (pole at the ventral tip of the central sulcus, prime
meridian along the fundus of the cs): x = mris->vertices[vindex].cx ;
static float e0[3] = {0.08, -0.73, 0.67} ;
static float e1[3] = {0.57, 0.58, 0.
Thanks Bruce,
How would I specify the new talairach.xfm in the run of recon-all -stage1.
If I copy the new file into the usual /mri/transforms directory, it's
overwritten
during the recon-all process.
Comments are appreciated.
Nam.
>>> Bruce Fischl <[EMAIL PROTECTED]> 01/06/05 4:55 PM >>>
chec
Hello Bruce,
Could you please let me know which function to call to convert
RAS->spherical(rho,theta)?
Thank you very much,
--Serge
Bruce Fischl wrote:
Hi Serge,
convert the ?h.sphere.reg file to ascii format, and lookup the verices
in it. That will give you (x,y,z) that you can convert to (rho,th
check the talairach transform
On Thu, 6 Jan 2005, Joongnam Yang wrote:
Hi,
During recon-all -stage1 running, I got the following error.
...
MRInormalize: could not find any valid peaks
No such file or directory
mri_normalize: normalization failed
No such file or directory
ERROR: mri_normalize e
Hi,
During recon-all -stage1 running, I got the following error.
...
MRInormalize: could not find any valid peaks
No such file or directory
mri_normalize: normalization failed
No such file or directory
ERROR: mri_normalize exited with non-zero status
-
Any suggestion would be appreciated.
Na
Hi Serge,
convert the ?h.sphere.reg file to ascii format, and lookup the verices in
it. That will give you (x,y,z) that you can convert to (rho,theta)
On Thu, 6
Jan 2005, Sergey A Solovyev wrote:
Many thanks, it works great.
The remaining problem is to convert vertex indexes/RAS coordinates int
Many thanks, it works great.
The remaining problem is to convert vertex indexes/RAS coordinates into
spherical coordinates (rho,theta), ascii text file, or print all
spherical coordinates
for a patch/label.
--Serge
Kevin Teich wrote:
That's true; you'll get an index, original RAS coordinates, and
That's true; you'll get an index, original RAS coordinates, and the
overlay value for each vertex in the label.
On Thu, 6 Jan 2005, Bruce Fischl wrote:
if you save a label with a statistical overlay, the stat field in the label
(the last field in each row) should have the statistic at that point
if you save a label with a statistical overlay, the stat field in the
label (the last field in each row) should have the statistic at that point.
Isn't that right Kevin?
Bruce
On Thu, 6 Jan 2005, Kevin
Teich wrote:
I wonder if there is a way to save all information above (index,
spherical coor
I wonder if there is a way to save all information above (index,
spherical coordinates, overlaid functionals values) into an ascii text
file for all vertexes located within a certain label (patch)?
The only thing close to this is the Save Summary function for time
courses. But it's not going to sa
Hi,
Tksurfer provides a nice tool to display information such as vertex
index, spherical coordinates (rho, theta), values of overlaid
functionals as a function of the mouse/cursor position.
I wonder if there is a way to save all information above (index,
spherical coordinates, overlaid functionals
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