Re: [Freesurfer] mri_vol2surf *.mat not found

Is vol2surf crashing? If not, then don't worry about the message as it does not use the direction cosines to map to the surface. doug Joongnam Yang wrote: > > For the mri_vol2surf, > > mri_vol2surf --src thresh_zstat1.img --src_type analyze --srcreg > func2struc.dat --hemi lh --projfrac 0.5

[Freesurfer] mri_vol2surf *.mat not found

For the mri_vol2surf, mri_vol2surf --src thresh_zstat1.img --src_type analyze --srcreg func2struc.dat --hemi lh --projfrac 0.5 --out ./thresh_zstat1-lh.w --out_type paint I got the following complaint. INFO: could not find XXX/XXX/thresh_zstat1.mat file for direction cosine info. Could someone

Re: [Freesurfer] Error in Sphere

Hi Massimiliano, something is pretty wrong. Can you send us the subject's dir (tarred and gzipped)? Bruce On Thu, 18 Nov 2004, Calabrese Massimiliano wrote: Hi everybody, does anyone give me an advice, please. I don't want to loose this subject at the end. Can I skip this step or can I try to fix

Re: [Freesurfer] mri_vol2surf warning seems serious

It's probably the case that the surface did not intersect your volume, which probably means that the registration is wrong. Did you visually inspect the registration with tkregister2? doug Joongnam Yang wrote: > > Hi, > > I would appreciate any comment on the following warning when I ran > m

[Freesurfer] mri_vol2surf warning seems serious

Hi, I would appreciate any comment on the following warning when I ran mri_vol2surf. At the end there is a warning, which might be serious. I ran lh and rh separately, and no warning message was issued for lh and the following warning was only issued for rh. . . . Done Mapping Source Volum

[Freesurfer] Error in Sphere

Hi everybody, does anyone give me an advice, please. I don't want to loose this subject at the end. Can I skip this step or can I try to fix it? Thanks a lot Massimiliano INFO: SUBJECTS_DIR is /net/apollo/nib/calabrem/freesurfer/subjects INFO: starting per-hemisphere operations - Starting

[Freesurfer] fsfast stxgrinder-sess

hello, i was running the stxgrinder-sess command and in the fsfast tutorial manual the results of this command are supposed to be f, fsig, t, sig, minsig, and iminsig. i don't get any t or sig files, and noticed that bert's tutorial data does not have these either. are these files not used anym