can you send us the mri/wm/COR-.info file? Does the wm volume look correct?
Does it come up in a coronal view properly in tkmedit (when you view volume
in csurf)?
thanks,
Bruce
On Fri, 8 Oct 2004, Kai Schreiber
wrote:
Hi there,
I just installed freesurfer, and I apologize if I'm missing someth
Hi there,
I just installed freesurfer, and I apologize if I'm missing something simple.
We read in structural data in AFNI's BRIK and HEAD format. Everything
works fine, until we run the white matter fill. This will write about
20K/second of error messages to error.log and run for several hours,
You can use:
mri_annotation2label
run it with --help to get docs
doug
Bruce Fischl wrote:
>
> yes. I think Doug has a command line utility (Doug?), but you can do it
> in tksurfer by selecting a parcellation unit, then doing file->label->save
> selected label for the ones you want.
>
> cheer
If you have the dev version of tksurfer Kevin's added a File -> Load Label
Value File feature that lets you load a subset of annotation labels, with
values determined in a label value file.
On Fri, 8 Oct 2004, Keyma Prince wrote:
Yup I know you can do outlines.
But I would like to display areas
yes. I think Doug has a command line utility (Doug?), but you can do it
in tksurfer by selecting a parcellation unit, then doing file->label->save
selected label for the ones you want.
cheers,
Bruce
On Fri, 8 Oct 2004, Keyma Prince
wrote:
Yup I know you can do outlines.
But I would like to dis
Yup I know you can do outlines.
But I would like to display areas that are showing certain properties. It
would make it visualize what is going on in the brain if i can only have
particular labels from the annotation file displayed on the brain. Is
there anyway to achieve this?
- Keyma
Keyma Pr
I guess so. You can also display the annotations/labels as outlines if
having them all is obscuring stuff you want to see (tksurfer->view->label
style or something like that).
cheers,
Bruce
On Fri, 8 Oct 2004, Keyma Prince wrote:
Hello,
I would like to import the annotation file into the csurf b
Hello,
I would like to import the annotation file into the csurf but with only
certain labels produced by parcellate subject. I would like to use this to
display some of the labels produced by the parcellate subject onto the
inflated brain.
Do I have to extract the labels from the annotation file
Hi,
if you have made the final surface, then the thickness measurements have
already been done as well. They are stored in files named ?h.thickness in
curvature file format (you can load and display them using the file->load
curvature command in tksurfer).
cheers,
Bruce
On Fri, 8 Oct 2004, Wan
After processing the volume, creating the surface, making the final
surface and registering the surface, I would like to measure the
cortical thickness with freesurfer. Could you please give me hints
about how and where to start? thanks
Wan Park
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