[Freesurfer] flattening problems

2004-10-01 Thread Jack Grinband
Hi All, I'm new to FS and I'm having trouble with the flattening step. After making the cuts, the instructions in the FreeSurferGuide (p44) are to fill the non-midbrain regions and save the patch. 1. It's not clear to me what the difference is between the blue and the white fill. 2. I filled

Re: [Freesurfer] license key

2004-10-01 Thread Kevin Teich
Hello, I received a license key by email, but cannot find where in the license it should go. Thanks, Margaret It should go in a file named .license and placed in your FREESURFER_HOME directory. Note the leading dot in the filename. -- Kevin Teich ___

[Freesurfer] license key

2004-10-01 Thread Margaret Duff
Hello, I received a license key by email, but cannot find where in the license it should go. Thanks, Margaret ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] mris_glm-sess

2004-10-01 Thread Doug Greve
Can you send me the directory that you are running it from? Also, what does it print out? Also, please send the log file (it is in the log directory). doug On Fri, 1 Oct 2004, Trinity Urban wrote: I'm trying to use mris_glm-ses for the first time but something is going wrong. It seems to run ok

[Freesurfer] mris_glm-sess

2004-10-01 Thread Trinity Urban
I'm trying to use mris_glm-ses for the first time but something is going wrong. It seems to run ok but there is no output file. What am I doing wrong? mris_glm-sess -hemi rh -projfrac 0.5 -fsgd test.fsgd -sf test.sessid -a individual_anal_FE -contrast allvfix_de --trgsubj average7 --gcv 1 -1 0