Re: [O] Don't ask, don't run

Eric Schulte gmail.com> writes: > There is no way to customize `org-confirm-evaluate' to achieve this > behavior, however it can be accomplished through creative use of the > :eval header argument, by using the `org-export-current-backend' > variable to inhibit evaluation during export. > > #+be

Re: [O] calculating column averages

Jude DaShiell shellworld.net> writes: > > In this case I don't want to tell org-mode how many rows to calculate, and > I put a table together with an averages line in its own footer section. Since you have a header & footer, one solution is to use a formula like this: :=vmean(@I..@II)

[O] LaTeX export crashes

Hi, the following document makes a LaTeX export (C-c C-e d) crash with "Args out of range: "", -1, 0".  After that, exporting (to any format) dies with the same error. -- #+TITLE: Test doc #+AUTHOR: Ken Williams Some stuff. #+begin_src R 5+5 #+end_src ---

[O] LaTeX export crashes

Hi, the following document makes a LaTeX export (C-c C-e d) crash with "Args out of range: "", -1, 0". After that, -- #+TITLE: Test doc #+AUTHOR: Ken Williams Some stuff. #+begin_src R 5+5 #+end_src -- Is this a known problem? If I eith

Re: [O] LaTeX export crashes

On Thu, Oct 13, 2011 at 4:48 PM, Ken Williams wrote: > Hi, the following document makes a LaTeX export (C-c C-e d) crash with > "Args out of range: "", -1, 0".  After that, exporting (to any format) > dies with the same error. > [snip] Then Sebastien Vauban wrot

Re: [O] LaTeX export crashes

On Mon, Oct 17, 2011 at 4:52 PM, Nick Dokos wrote: > Ken Williams wrote: > >> Here's a full stack trace, does this make it any more evident what's going >> on? >> > > Not really: you have not mentioned what version you are using. I did post my complete

Re: [O] LaTeX export crashes

On Mon, Oct 17, 2011 at 8:31 PM, Nick Dokos wrote: > > As I pointed out in the subsequent message, that's not good enough: 7.7 came > out > on July 28 and the fix (at least what I *think* is the fix) did not go in > until > September 13. Ah, I see - I was thinking 7.7 came out at the end of Sep

Re: [O] zotero plain, org-odt, and citations in general

Jambunathan K gmail.com> writes: > > > Basically all that one can do in org-mode at the moment is insert & > > update citations, and following citation links to the entry in Zotero. > > Can you or someone provide me how such an Org file with citation > definition and reference looks like? I'd

[O] Hang on incomplete input

'debug()' on a function that's now being called, or even just on long-running calculations. Any chance evaluation could be done in a separate thread or something? Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e

Re: [O] Hang on incomplete input

Rafael wrote: > In Ubuntu 10.10, emacs 23.2 and recent org, I get an *Org-Babel Error > Output* buffer, saying: > > Error: unexpected '}' in: > "ddply(x, > }" > Execution halted I'm using: GNU Emacs 23.3 (from http://vgoulet.act.ulaval.ca/en/emacs/windows/) Windows 7 org-mode 7.7 ESS 5.14 What

Re: [O] Hang on incomplete input

ull .org file looks like this: ### #+TITLE: Test doc #+AUTHOR: Ken Williams #+BABEL: :session *Rt* * My Header Some code: #+begin_src R ddply(x, #+end_src ### With that change, is the hang reproducible? > If that does not bear fruit, you can M-x toggle-debug-o

Re: [O] Hang on incomplete input

> -Original Message- > From: nicholas.dokos > Sent: Thursday, December 01, 2011 12:19 PM > > Note also that #+BABEL: is obsolete for versions of org more recent than Oct. > 20 or so. You seem to still be running 7.7 from late July or early August, so > you > should still be OK, but when

[O] More specific LaTeX output classes

hing between input & output. Or of course it's possible some of this is already implemented and I've missed it. =) -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipie

[O] Subscripts in URLs

et* is correct, though. Was there a subsequent commit that changes things back, or maybe something else I'm missing? I'd like for the anchor text to just appear without org-mode's formatting stuff. Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com

Re: [O] Subscripts in URLs

From: Bastien Guerry [mailto:bastiengue...@googlemail.com] > > Ken Williams writes: > > > and export to HTML, I get a link with anchor text > > > http://www.mmm.ucar.edu/events/ISP/presentations/JNTforecastevaluati > on > > concepts.pdf, where "forecastev

[O] Exporting inline code sections

;) (:exports . "both") (:results . "replace") (:session . "none"))) inline) org-babel-exp-inline-src-blocks(1 83) #[(pair) "\211A@)\n \"\207" [pair x start end] 4]((src org-babel-exp-inline-src-blocks)) mapcar(#[(pair) "\211A@)\n \"

Re: [O] Exporting inline code sections

> -Original Message- > From: Ken Williams > Sent: Monday, August 13, 2012 3:37 PM > > I'm still at version 7.8.03, apologies if this has been addressed in a later > version already. FWIW, I just downloaded 7.8.11 and confirmed that the problem still exists

Re: [O] Exporting inline code sections

> -Original Message- > From: Bastien Guerry [mailto:bastiengue...@googlemail.com] > Sent: Monday, August 13, 2012 4:56 PM > > Now fixed in git, thanks. Such service! =) > > Yes. Patch welcome! I'll have a shot at it. I'm very bad at elisp though. The other thing I just noticed was t

Re: [O] Exporting inline code sections

> -Original Message- > From: Bastien Guerry [mailto:bastiengue...@googlemail.com] > Sent: Monday, August 13, 2012 4:56 PM > Ken Williams writes: > > > FWIW, I just downloaded 7.8.11 and confirmed that the problem still > > exists there. > > Now fixed

Re: [O] Exporting inline code sections

> -Original Message- > From: nicholas.do...@hp.com [mailto:nicholas.do...@hp.com] > Sent: Monday, August 13, 2012 6:34 PM > > Ken Williams wrote: > > > The other thing I just noticed was that every time I edit a table.el > > table with C-c ', two more

Re: [O] Exporting inline code sections

> -Original Message- > From: nicholas.do...@hp.com [mailto:nicholas.do...@hp.com] > Sent: Tuesday, August 14, 2012 10:20 AM > > You might want to try edebug instead of the standard debugger, MUCH better, thanks! -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of

[O] [patch] change indentation logic for edit-src

xify', not sure whether that's kosher or not. One change that would be nice to make to it is to avoid prefixing the final line if it's blank, but I couldn't get that to work. Also - could that essentially be replaced by a call to string-insert-rectangle? -- Ken Wil

Re: [O] [patch] change indentation logic for edit-src

Hi, I know Bastien's out of touch for a few days, but could someone say whether a patch to the mailing list is the right place to put it, or should I put it on GitHub or somewhere else? Thanks. -Ken > From: Ken Williams > Sent: Thursday, August 16, 2012 2:30 PM > To: emacs-o

[O] Testing the git latest

isp/org.el \ -l lisp/org-id.el -l testing/org-test.el \ --eval "(progn (org-reload) (setq org-confirm-babel-evaluate nil))" \ -f org-test-run-batch-tests Searching for program: no such file or directory, /bin/zsh I'm on Cygwin, is that not a supported testing conf

Re: [O] [patch] change indentation logic for edit-src

> -Original Message- > From: Bastien Guerry [mailto:bastiengue...@gmail.com] > Sent: Tuesday, August 21, 2012 6:14 PM > > Mh... for me there is no change. There are always 2 spaces added before > table.el tables. The prior behavior I've been seeing is that there are 2 spaces added *ever

[O] Breadcrumbs?

always-present shown at the top of the frame, but maybe it would be better as something shown on demand in the minibuffer, possibly making it taller while shown. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTI

Re: [O] Breadcrumbs?

Very nice, thanks. I like to see the top-level heading too, so I removed the (rest ...) call near the beginning. -Ken From: Anthony Lander [mailto:anth...@landerfamily.ca] Sent: Monday, September 24, 2012 7:45 PM To: Ken Williams Cc: emacs-orgmode@gnu.org Subject: Re: [O] Breadcrumbs? Hi

[O] Base64 embedded images?

[[file:foo.png]] tag (usually this is the result of plotting something in R), and the Base64 encoding happens to all images during *export*. The above approaches create the Base64-encoded tag right in the org-mode buffer, which limits the other types of exports one can do (e.g. normal HTML, La

[O] Outline export styles

distributions 1.1 Create a vector of 1,000 uniformly-sampled random integers is there a configuration somewhere for that? Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient

Re: [O] Outline export styles

I found the 'section-number-format' variable, which customizes nicely to do what I asked about. But on second thought, I guess that's not what I really want. Because my "Create a vector..." stuff is actually a paragraph or so, and doesn't fit nicely on one line as a headline. So it looks like

[O] Can't get 'sh' blocks working

.el" . I'm not sure where that's coming from, I don't have any mention of agenda stuff in my .emacs. Any pointers for the 'sh' error or for getting a stack trace? Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com __

Re: [O] Can't get 'sh' blocks working

quot;) ) org-babel-load-languages '((emacs-lisp . t) (sh . t) (R . t)) org-alphabetical-lists t org-clock-out-hook '(org-clock-remove-empty-clock-drawer) org-confirm-babel-evaluate nil ) From: Ken Williams Sent: Wednesday, January 02, 2013 1:0

[O] Problem exporting code

I'm giving a talk tomorrow on org-mode and R, and I'm having an exporting problem that's tripping me up. Usually when I export code/output sections to HTML, they get CSS classes like "src-R" for R code, "src-perl" for perl code, "example" for output. But now they're all "example". Has anyone see

Re: [O] Problem exporting code

h. On Sun, Jan 20, 2013 at 5:44 PM, Ken Williams wrote: > I'm giving a talk tomorrow on org-mode and R, and I'm having an exporting > problem that's tripping me up. > > Usually when I export code/output sections to HTML, they get CSS classes > like "src-R

Re: [O] Problem exporting code

On Sun, Jan 20, 2013 at 9:15 PM, Eric S Fraga wrote: > Ken Williams writes: > > Unfortunately, downgrading to 7.8.11 didn't change the behavior - all >> code sections are still exported to HTML as class "example". >> I also see that on one machine, using 7

Re: [O] Problem exporting code

On Sun, Jan 20, 2013 at 10:57 PM, Ken Williams wrote: > > I'm grasping at straws too, not knowing my way around the elisp code very > well. =) > It looks like the function controlling this behavior is `org-export-format-source-code-or-example`, in org-exp.el:

Re: [O] Problem exporting code

Thanks John. Here's a small org file: >>>>>>>>>>>>>>>>>>>>> #+TITLE: Sample Doc #+AUTHOR:Ken Williams #+EMAIL: kena...@gmail.com #+DATE: 2013-01-21 #+PROPERTY: results output #+PROPERTY: exports both #+LATEX_HEADER:

Re: [O] Problem exporting code

13 at 10:57 PM, Ken Williams wrote: > > > > On Sun, Jan 20, 2013 at 9:15 PM, Eric S Fraga wrote: > >> > >> Ken Williams writes: > >> > >>> Unfortunately, downgrading to 7.8.11 didn't change the behavior - all > >>> code sections

Re: [O] Problem exporting code

(is htmlize not able to be loaded via 'load-path' and 'require'?), but after downloading htmlize 1.43 and adding the following to my .emacs, I seem to be in business again: (load-file "~/share/emacs/site-lisp/htmlize/htmlize.el") Thanks everyone. On Mon, Jan 21, 2

Re: [O] Problem exporting code

On Mon, Jan 21, 2013 at 10:48 AM, John Hendy wrote: > > Awesome that you got it going. Do you still have =(require > 'org-install)= in your .emacs? ETA: just checked and you do. I checked > as I had an issue with emacs not using the git version of org because > I stupidly had =(require 'org-insta

Re: [O] Problem exporting code

On Mon, Jan 21, 2013 at 4:16 PM, John Hendy wrote: > On Mon, Jan 21, 2013 at 11:45 AM, Ken Williams wrote: > > > > On Mon, Jan 21, 2013 at 10:48 AM, John Hendy wrote: > >> > >> > >> Awesome that you got it going. Do you still have =(require > >&g

Re: [O] Problem exporting code

On Mon, Jan 21, 2013 at 5:02 PM, John Hendy wrote: > > On Jan 21, 2013 4:51 PM, "Ken Williams" wrote: > > > > It's been a while since I've used this machine, so I'd updated to the > latest Aquamacs, but it looks like Aquamacs itself hasn't see

Re: [O] Problem exporting code

On Tue, Jan 22, 2013 at 1:49 AM, Bastien wrote: > Hi Thomas and all, > > t...@tsdye.com (Thomas S. Dye) writes: > > > Ken Williams writes: > > > >>> I've been using this: > >>> - http://vgoulet.act.ulaval.ca/en/emacs/mac/ > > T

[O] More decoration for babel output

by green/red. Would this be helpful to include by default? Patch attached. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain

[O] No pictures when exporting narrowed/subtree

on 7.7 ======= #+TITLE: A Document #+AUTHOR: Ken Williams #+BABEL: :session *Rt* :results output :exports both * Section 1 Some text. * Section 2 Some more text. #+begin_src R :results graphics :file testout.png plot(1:10, (1:10)^2) #+end

Re: [O] org-jira.el updated

Bao Haojun gmail.com> writes: > I have updated the org-jira.el as suggested by Bastien and Richard > Riley: Amazing. Just 120 seconds ago I got out of a meeting where we talked about using Jira more widely in our company, and I worried that I'd duplicate too much between my org-mode journals and

Re: [O] No pictures when exporting narrowed/subtree

> -Original Message- > ... if I put my cursor near "Some more text" and choose 'switch > buffer/subtree export' when exporting, or if I narrow (C-x n d) to that > subtree and then export, the 'testout.png' plot doesn't show up. Ping - anyone able to replicate or not replicate this? -Ken

[O] SO question on dynamic arguments

I asked this question on Stack Overflow today, I wonder if someone might know the answer here: http://stackoverflow.com/questions/9215216/computing-argument-values-dynamically It's about computing arguments to a "#+begin_src R" block based on previous R results. Thanks.

[O] I'm tripping over #+BABEL: vs. #+PROPERTY:

t says "code blocks are named with - results are named with code block may still be labeled with named with #+tblname: will be considered to be named results". What on earth does that mean?? I would offer a doc patch but I can't figure it out. =) -- Ken Williams, Senior Research

Re: [O] I'm tripping over #+BABEL: vs. #+PROPERTY:

Aha! That was the trick, thanks. How about a translation of the text for question 2)? -Ken > -Original Message- > From: Eric Schulte [mailto:eric.schu...@gmx.com] > Sent: Wednesday, March 14, 2012 1:29 PM > To: Ken Williams > Cc: emacs-orgmode@gnu.org > Subject: Re

Re: [O] I'm tripping over #+BABEL: vs. #+PROPERTY:

> -Original Message- > From: Eric Schulte [mailto:eric.schu...@gmx.com] > Sent: Wednesday, March 14, 2012 1:40 PM > To: Ken Williams > Cc: emacs-orgmode@gnu.org > Subject: Re: [O] I'm tripping over #+BABEL: vs. #+PROPERTY: > > > How about a transl

[O] Bug: Tabbing error with asterisks [7.8.03]

I have the following document: -- #+TITLE: Test Doc #+AUTHOR: Ken Williams * Top header Top paragraph. #+begin_src R library(testthat) test_that("failures", { expect_that(6, equals(9)) expect_that(6, equals(9)) expect_that(6, equals(9)) expect_that(6

Re: [O] Bug: Tabbing error with asterisks [7.8.03]

Bastien gnu.org> writes: > Hit C-c ' twice and you'll have commas inserted before the lines > starting with an asterisk. > That works as a workaround, as long as I remember to do it. Is there a reason not to automatically do this to the return value of doing "C-c C-c" on all "#begin_src R" blo

[O] Auto-fill-mode with code sections

a configuration that will get me folding in the body sections, but not in the code sections? It could use another mechanism besides auto-fill-mode if that's what's preferred these days, but auto-fill-mode is the one I'm familiar with. Thanks. -- Ken Williams, Senior Res

Re: [O] Auto-fill-mode with code sections

Ping - I'm still interested in this, if anyone has any recommendations. Thanks. -Ken > From: Ken Williams > Sent: Tuesday, May 01, 2012 8:51 AM > To: emacs-orgmode@gnu.org > Subject: Auto-fill-mode with code sections > > Hi, > > I use org-mode extensively with R c

[O] Export width for generated SVG image?

it down. ":width 1000" doesn't seem to have any effect, nor does wrapping like so: #+BEGIN_HTML #+END_HTML ... dot diagram here ... #+BEGIN_HTML #+END_HTML ... because the interior SVG just overrides the width of its parent. Any suggestions? I'm using version 7.9.2-d

Re: [O] Export width for generated SVG image?

> -Original Message- > From: John Hendy [mailto:jw.he...@gmail.com] > Sent: Tuesday, March 26, 2013 3:49 PM > > Are you using the new exporter or old? I believe the old syntax would have > been: > > #+attr_html width="100%" > [[image.svg]] Beautiful, thanks. -Ken

[O] attr_html for table.el tables?

cause without borders the structure isn't very clear. It looks like `#+attr_html` doesn't have any effect on table.el tables, correct? Is there another mechanism to specify export options when org-mode renders table.el tables to HTML? -- Ken Williams, Senior Research Scientist

[O] Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @ c:/Users/kwilliams/share/emacs/site-lisp/org/)]

Invalid search bound (wrong side of point)". The key piece seems to be the '...' string in the 4th cell. ===== #+TITLE: Example Doc #+AUTHOR: Ken Williams * Failing table Example: +--+---+ |Name |Examples | +--+-

Re: [O] Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @ c:/Users/kwilliams/share/emacs/site-lisp/org/)]

g-babel-hide-all-hashes) org-src-preserve-indentation t org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc org-beamer-auto-fragile-frames org-beamer-place-default-actions-for-lists) org-export-latex-after-initial-vars-hook '(org-beamer-a

Re: [O] Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @ c:/Users/kwilliams/share/emacs/site-lisp/org/)]

> -Original Message- > From: Nicolas Goaziou [mailto:n.goaz...@gmail.com] > Sent: Thursday, March 28, 2013 10:49 AM > To: Ken Williams > > Ken Williams writes: > > > Something apparently even ate part of the attachment - there are some > > Null bytes in

Re: [O] Can't get dvipng to work

Rasmus gmx.us> writes: > > So in short I think the easiest course of action is upgrading to the > newest release, e.g. using ELPA (M-x list-packages). I agree - I'm trying to update now. I hadn't used ELPA before, so I tried that route and I'm getting a ton of 'ox-*' related errors like this:

Re: [O] Can't get dvipng to work

Ken Williams gmail.com> writes: > I can try installing manually but it would be great if I could get ELPA > working. So I installed org-8.1.2 manually and now it does seem to be *trying* to process the images through LaTeX. But it's not succeeding. In the *Messages* buff

Re: [O] Can't get dvipng to work

Nick Dokos gmail.com> writes: > > Ken Williams gmail.com> writes: > > > I pasted the contents of ~/AppData/Local/Temp/orgtex6488Qq2.log here, but I > > don't see anything strange in it: > > > > https://gist.github.com/kenahoo/6613374 > > >

Re: [O] Can't get dvipng to work

Rasmus gmx.us> writes: > > Then try to run dvipng FILE.dvi or perhaps just dvipng FILE. Does > this work? Yes, it produces a proper output PNG that looks good, but note that the base filename has a '1' appended: % dvipng orgtex6488Qq2.dvi This is dvipng 1.14 Copyright 2002-2010 Jan-Ake Larsso