[Orgmode] [bug] small problem with tags in HTML export with H:1 option set

2010-09-14 Thread Erik Iverson
See the following .org file for an explanation, I think it's a small bug... == #+TITLE: HTML Export with #+OPTIONS: H:1 set #+STYLE: p {color: red; font-family:sans-serif;} #+OPTIONS: h:1 toc:nil * Here is a headline, no spac

Re: [Orgmode] Bibtex and latex export

2010-09-15 Thread Erik Iverson
Rafael, I asked the same question last week :). http://www.mail-archive.com/emacs-orgmode@gnu.org/msg30073.html I've just now looked into the org-latex.el file, and found: (defcustom org-latex-to-pdf-process '("pdflatex -interaction nonstopmode -output-directory %o %f" "pdflatex -intera

Re: [Orgmode] Worg updating?

2010-09-17 Thread Erik Iverson
Hello, Worg now publishes the results of its publishing script, at: http://orgmode.org/worg/publishing.txt I had Bastien install R for an update to the R docs that I'm doing, and it appears to work when he does a manual publish. But I think the problem is that R is not in the path of whatever

[Orgmode] exporting to a specified directory

2010-09-20 Thread Erik Iverson
Hello, Can you set some option in an org-mode buffer telling the exporter to write the HTML and PDF versions of the document in a specific directory? I know the publishing mechanism does this, just wondering if there is a simple variable to set per file to set this on export, or do I need to set

Re: [Orgmode] Ditaa usage

2010-09-22 Thread Erik Iverson
On 09/22/2010 08:08 AM, Juri Artamonov wrote: Hello John, if I add what you provided then I have "Warning (initialization): An error occurred while loading `c:/emacs/.emacs.d/init.el': Symbol's function definition is void: org-babel-do-load-languages" message. From your previous post, looks

Re: [Orgmode] Re: does #+PROPERTY still exist ?

2010-09-22 Thread Erik Iverson
On 09/22/2010 10:13 PM, Vincent Belaïche wrote: Hello all, Thanks for all the feedback. I am using Org-mode version 6.33x which is the latest on emacs CVS repository --- that may be outdated as emacs is using bazaar now. Yes, very outdated. Orgmode 7.01 was released over two months ago now.

Re: [Orgmode] Org-mode screencasts

2010-09-23 Thread Erik Iverson
Richard, First of all, your MobileOrg screencasts are very nice. In my opinion, keeping things high-level and showing the major features are what is important. In a way, they are commercials for the product, and I think the best way to entice people into trying the product is to make them say "W

Re: [Orgmode] wrap sourcecode?

2010-09-23 Thread Erik Iverson
On 09/23/2010 07:11 PM, Matt Price wrote: This may be an odd request, but is it possible to wrap sourcecode blocks? attached is the org source for the following page, rendered by wordpress using html generated by org2blog: http://www.hackinghistory.ca/lab-01-understanding-html/ You can see that

Re: [Orgmode] Re: Org-mode screencasts

2010-09-23 Thread Erik Iverson
On 09/23/2010 07:45 PM, Richard Moreland wrote: I jumped the gun a bit and decided to put together a video showing the very basics. It seems overly simple when I re-watch it, but I think it is helpful for those who are unsure how to get started with the basics of Org-mode. http://ncogni.to/or

Re: [Orgmode] Re: Org-mode screencasts

2010-09-23 Thread Erik Iverson
On 09/23/2010 07:45 PM, Richard Moreland wrote: I jumped the gun a bit and decided to put together a video showing the very basics. It seems overly simple when I re-watch it, but I think it is helpful for those who are unsure how to get started with the basics of Org-mode. http://ncogni.to/or

Re: [Orgmode] Re: Org-mode screencasts

2010-09-23 Thread Erik Iverson
rker who just got emacs and org-mode up on his computer and would love to have something this simple and clear-cut. Great work, again. John On Thu, Sep 23, 2010 at 9:54 PM, Erik Iverson mailto:er...@ccbr.umn.edu>> wrote: On 09/23/2010 07:45 PM, Richard Moreland wrote:

[Orgmode] publishing orgmode to a CMS

2010-10-01 Thread Erik Iverson
Does anyone have any general advice or comments regarding the publishing of org-mode documents to a CMS? I'm thinking of the case where I have HTML files generated by Org-mode, and want to publish it Worg-style, but would prefer to publish to a system with comments/RSS/etc. If anyone has done th

Re: [Orgmode] [babel] creating simple vectors in R

2010-10-05 Thread Erik Iverson
Hello, Dan Davison wrote: I'd appreciate opinions from R users on the following org-babel-R details: I use R daily, with and without org-mode, but have never investigated these features of passing tables and Lisp lists to source blocks, but it looks interesting. More below. Currently, Org

Re: [Orgmode] Tracking time with MobileOrg

2010-10-06 Thread Erik Iverson
Jeff Kowalczyk wrote: Can the current version of MobileOrg be used for a simple time tracking workflow? (i.e. does it have an easy clock in and clock out?) I do not believe so, but I will put in my vote for this being a really, really good idea. My wife has a need for a simple time trackin

Re: [Orgmode] [babel] Writing R-packages the org way?

2010-10-07 Thread Erik Iverson
Rainer M Krug wrote: Hi I am about to write an R package, and as I am an org-mode and org-babel user, I would (obviously) like to use org-mode for that. Is there a recommended way of writing an R package in org-babel, or do I have effectively wrap the R code for the documentation etc. into

[Orgmode] Re: [babel] Writing R-packages the org way?

2010-10-07 Thread Erik Iverson
Dan Davison wrote: Erik Iverson writes: Rainer M Krug wrote: Hi I am about to write an R package, and as I am an org-mode and org-babel user, I would (obviously) like to use org-mode for that. Is there a recommended way of writing an R package in org-babel, or do I have effectively wrap

Re: [Orgmode] Re: mobileorg app can't sync

2010-10-21 Thread Erik Iverson
I have same same error. The steps I took are as follows; - Downloaded MobilOrg app for iPhone. - Created an account on Dropbox. - Linked Mobilorg to Dropbox account. - Created test entry in Mobilorg. - Attempted to sync. Error returned "Error syncing changes. An error was encountered while at

Re: RE [Orgmode] Re: Issues with org-mode and LaTeX export.

2010-10-21 Thread Erik Iverson
For the time being I am stuck with this version. I am sending a request to our IT group to upgrade Emacs to the most recent version for the version of RedHat we have, this should have a more recent version of org-mode, if I am lucky that should be done in a couple weeks. In the mean time I wi

Re: [Orgmode] Re: mobileorg app can't sync

2010-10-21 Thread Erik Iverson
Luke Crook wrote: On Thu, Oct 21, 2010 at 11:17 AM, Erik Iverson <mailto:er...@ccbr.umn.edu>> wrote: I have same same error. The steps I took are as follows; - Downloaded MobilOrg app for iPhone. - Created an account on Dropbox. - Linked Mo

Re: [Orgmode] TikZ to separate file (babel?) possible?

2010-10-22 Thread Erik Iverson
John, Does http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-LaTeX.php#sec-4_2 help? There is a tikz example there. The :file argument may be all you're missing, and putting your code in a latex source block. Here is what I do when I have an R code block that generates LaTeX code. Ho

Re: [Orgmode] Release 7.02

2010-10-29 Thread Erik Iverson
Jeff Horn wrote: On Fri, Oct 29, 2010 at 2:49 AM, Carsten Dominik wrote: Implement MathJax support == Org-mode now uses MathJax to display math on web pages. We serve MathJax from the orgmode.org server, at least for the time being (thanks Bastien!). If you are goin

Re: [Orgmode] Release 7.02

2010-10-29 Thread Erik Iverson
:03 PM, Erik Iverson wrote: Jeff Horn wrote: On Fri, Oct 29, 2010 at 2:49 AM, Carsten Dominik wrote: Implement MathJax support == Org-mode now uses MathJax to display math on web pages. We serve MathJax from the orgmode.org server, at least for the time being (thanks

Re: [Orgmode] Installing Orgmode through ELPA-tarball

2010-11-01 Thread Erik Iverson
I agree about the word 'easiest'. Perhaps a more neutral phrasing of the question, such as: "How can I install Orgmode through Emacs' Package Manager?" Tom Short wrote: On Mon, Nov 1, 2010 at 8:05 AM, Jambunathan K wrote: ** What is the easiest way to install latest version of Orgmode? Th

[Orgmode] org-mode completion tip

2010-11-05 Thread Erik Iverson
Hello, I have always ignored in-buffer Completion (http://orgmode.org/org.html#Completion) in org-mode because it is bound to M-, which my window manager (any many others) use to switch applications. Many of you may have disabled your window manager's special usage of that key, or re-bound the o

Re: [Orgmode] Re: [babel] "tangle" results of source blocks?

2010-11-08 Thread Erik Iverson
Unfortunately I can't look this up at the moment, but my guess is that the :results code option might help with what you want? Maurizio Vitale wrote: "Sébastien" == Sébastien Vauban writes: Sébastien> Hello Maurizio, Sébastien> Maurizio Vitale wrote: >> Hi, I have procmail rules d

Re: [Orgmode] Inserting text into the part of an HTML document?

2010-11-18 Thread Erik Iverson
Stephen, There may be a better answer, but I see in the doc-string for org-export-html-style, that: As the value of this option simply gets inserted into the HTML header, you can \"misuse\" it to add arbitrary text to the header. See also the variable `org-export-html-style-extra'. However, I

Re: [Orgmode] Re: Clock report (R from the agenda)

2010-11-19 Thread Erik Iverson
I don't know what this thread is about, but it seems related. Aapologies if I'm hijacking it, but as of my latest pull just this morning, my agenda has no clocktable in it, where as it previously did. I have not changed anything as far as I know. Thanks! --Erik Sébastien Vauban wrote: Hi Cars

Re: [Orgmode] org-latex-to-pdf-process missing?

2010-11-22 Thread Erik Iverson
I'm guessing you just need to (require 'org-latex) --Erik Jeff Horn wrote: Dear orgsters, Sorry for the noise, but it isn't immediately clear to me from the docs. `C-h v org-latex-to-pdf-process` indicates that the variable doesn't exist in my org-mode installation. I'm using org-mode 7.3 in

Re: [Orgmode] Re: Clock report (R from the agenda)

2010-11-22 Thread Erik Iverson
Carsten, yes, fixed, thank you! Carsten Dominik wrote: Hi Erik, please pull and see if the error persists. What is the value of org-agenda-start-with-clockreport-mode ? - Carsten On Nov 19, 2010, at 7:38 PM, Erik Iverson wrote: I don't know what this thread is about, but it seems re

Re: [Orgmode] inconsistent export of R results in orgmode 7.3,

2010-11-22 Thread Erik Iverson
Ian, What does your *R* session buffer look like when this does and does not work? The same? Perhaps the prompt is getting confused at some point? Your example has worked 4 times in a row for me... --Erik Ian Kennedy wrote: Since upgrading to org-mode 7.3 I have had inconsistent export of R

[Orgmode] org-indent mode not indenting free text?

2010-11-23 Thread Erik Iverson
Hello, I just pulled the latest org from git, and org-indent mode does not seem to be fully working anymore. I still see the additional stars added to headlines, and they are shadowed properly. But the free text lines under each headline are not shown indented as they previously were. I cannot

Re: [Orgmode] Synchronize files among computers via MobileOrg, and create tasks from iPhones?

2010-12-01 Thread Erik Iverson
Jing Su wrote: Dear all, Just curious that if we could push to the MobileOrg server, e.g., DropBox, from a computer, and pull it down from another computer, so that we can synchronize org files on different computers via MobileOrg. I store all my *actual* org files on Dropbox, along with

Re: [Orgmode] org-indent mode not indenting free text?

2010-12-02 Thread Erik Iverson
d be mis-remembering. --Erik Carsten Dominik wrote: Hi Erik, are you still having this problem? - Carsten On Nov 23, 2010, at 5:47 PM, Erik Iverson wrote: Hello, I just pulled the latest org from git, and org-indent mode does not seem to be fully working anymore. I still see the addit

Re: [Orgmode] org-indent mode not indenting free text?

2010-12-02 Thread Erik Iverson
I also don't understand the following part of Antti's message: "Free text is still not indented and indents are only one space." That seems contradictory to me? --Erik Erik Iverson wrote: Carsten, Not as far as I can tell, it seemed fixed to me after David's

Re: [Orgmode] Re: org-indent mode not indenting free text?

2010-12-03 Thread Erik Iverson
Just a guess here: This may be some weirdness because the check in org-indent *will* allow people using GNU Emacs 23.1.50 to turn on org-indent, as far as I can tell. The message "org-indent-mode can crash Emacs 23.1" does not fully explain if it can also crash 23.1.50. If indeed you should be h

Re: [Orgmode] Re: org-indent mode not indenting free text?

2010-12-03 Thread Erik Iverson
Carsten Dominik wrote: Hi Erik, On Dec 3, 2010, at 5:18 PM, Erik Iverson wrote: Just a guess here: This may be some weirdness because the check in org-indent *will* allow people using GNU Emacs 23.1.50 to turn on org-indent, as far as I can tell. org-indent-mode should work in 23.1.50

Re: [Orgmode] Elsevier's "Executable Paper Grand Challenge"

2010-12-07 Thread Erik Iverson
The purpose of the Executable Paper Challenge is to invite scientists to put forth their ideas pertaining to these pressing and unsolved questions. I come up with the same answer to all four questions --- Org-mode! Yes, these are only unsolved questions to those who haven't discovered

Re: [Orgmode] [RFC] Self-configuring Org-mode files

2010-12-10 Thread Erik Iverson
Jeff Horn wrote: On Fri, Dec 10, 2010 at 2:09 AM, Thomas S. Dye wrote: 4) A super-function in the Library of Babel would set the buffer-local instance of every relevant Org-mode variable to its default state: #+source: lob-set-local-defaults #+begin_src emacs-lisp ... #+end_src Would this f

Re: [Orgmode] How can i share a single org-default-notes-file between multiple instances of emacs?

2010-12-16 Thread Erik Iverson
Note a direct answer, but I would just open up all the buffers you use, and then either save window configurations in registers to recall them when you switch contexts, or use a package like Elscreen: http://www.emacswiki.org/emacs/EmacsLispScreen Eric Holbrook wrote: At work i typically need t

Re: [Orgmode] [OT] Emacs for Windows 7

2010-12-16 Thread Erik Iverson
Markus Heller wrote: Hello all, I know this is OT, but I'm going to have to have my work computer upgraded to Apparently that's a good idea! :) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.

Re: [Orgmode] [babel] ob-web

2010-12-17 Thread Erik Iverson
Sebastien, This is probably pretty simple to do with a number of org-mode supported languages. Since I know R best, I can recommend the RCurl package (http://www.omegahat.org/RCurl/) for doing exactly as you describe. I'll look into an R implementation of this when I get some time over break in

Re: [Orgmode] MobileOrg Android 0.5.0 - Now with native Dropbox support!

2010-12-21 Thread Erik Iverson
On 12/21/2010 06:25 PM, Matthew Jones wrote: Merry Christmas to all MobileOrg Android users... I am pleased to announce the 0.5.0 release of MobileOrg for Android. Great, looking forward to trying it out! This release includes support for Dropbox which is the single most requested feature.

Re: [Orgmode] Babel and R issue when exporting to PDF via LaTeX in Windows 7

2011-01-03 Thread Erik Iverson
Ben Ward wrote: Hi, all, I hope someone can help with this issue, Unfortunately I'm having a work PC upgrade, and it means Windows 7 and the order not to install any other system on it for compatibility and for the IT experts - I use the term loosely, to only need to know how to use one sys

Re: [Orgmode] Images from R in LaTeX and PDF

2011-01-07 Thread Erik Iverson
And what version of org are you using? Ben Ward wrote: #+begin_src R :exports both full <- read.csv(file="~/Documents/BSc Biology/Third Year/BY6001-40 - Dissertation/Data and Analysis/Evolution Results.csv", head=T) library("lattice") ecoli = subset(full, Bacterium=="E.coli") edett = subs

Re: [Orgmode] Help with migrating blog to org-mode format

2011-01-10 Thread Erik Iverson
Myriam, I write my content in Org-mode, and use weblogger.el to post my content. Just search for weblogger on Emacs wiki, and perhaps this will help a bit too: http://www.randomsample.de/dru5/node/77 This is about Drupal, but the ideas should work for posting to anything that supports xmlrp

Re: [Orgmode] org-babel, R, and org-babel-open-src-block-result

2011-01-11 Thread Erik Iverson
On 01/11/2011 04:22 AM, Leo Alekseyev wrote: I recently started using org-babel with R, and so far I think it's pretty great! I'm still getting accustomed to org-babel workflow and am playing with available options. I have a couple of questions: I noticed that C-c C-o (org-babel-open-src-block

[Orgmode] Question on org-beamer markup

2011-01-12 Thread Erik Iverson
Hello, According to http://orgmode.org/worg/org-tutorials/org-beamer/tutorial.html the following markup should work when exporting to PDF from an org-beamer document. - the first, very @important@, point! - the previous point shows the use of the special markup which translates to the Beame

Re: [Orgmode] Basic organization question

2011-01-14 Thread Erik Iverson
On 01/14/2011 09:35 PM, Tommy Kelly wrote: I can see that TODOs can be organized using tags, or categories, or files, or simply subtrees (or several of those). Is there an obvious choice? My vote is "NO", org is really about finding what works best for you, and the plethora of choices reflects

Re: [Orgmode] Blogging from org-mode

2011-01-17 Thread Erik Iverson
On 01/17/2011 01:13 PM, Juan Reyero wrote: On Sun, Jan 16, 2011 at 9:57 PM, Tom Breton (Tehom) mailto:te...@panix.com>> wrote: Some months back I contributed improvements to org-html. My intent was to make it easy to post org files as blog posts. So this is a sort of delayed announ

Re: [Orgmode] Blogging from org-mode

2011-01-17 Thread Erik Iverson
Hello, On 01/17/2011 03:02 PM, Samuel Wales wrote: On 2011-01-17, Erik Iverson wrote: I also simply use weblogger.el (http://www.emacswiki.org/emacs/WebloggerMode) I made the mistake of trying this, thinking it had no dependencies other than the other .el file so would be easier. It looks

Re: [Orgmode] Re: Worg needs some reorganizing

2011-01-20 Thread Erik Iverson
Jeff Horn wrote: On Thu, Jan 20, 2011 at 6:22 AM, Dan Davison wrote: I strongly second this. In fact I'll stick my neck out more: Worg is great, but for tutorials on org-mode, HTML export is often the wrong format for obvious reasons (i.e. unless you go to some trouble, it conceals a lot of t

Re: [Orgmode] Need help on org-exp-blocks and dot

2011-01-20 Thread Erik Iverson
Bryan Emrys wrote: Hi, Now getting an error message: /bin/bash: dot: command not found Hmm. Pathname issue? Absolutely. On the mac, dot is in /opt/local/bin/dot My .emacs file has: (setq load-path (cons "/opt/local/bin" load-path)) That won't add anything to your shell's path, it's ju

Re: [Orgmode] Need help on org-exp-blocks and dot

2011-01-20 Thread Erik Iverson
opt/local/sbin:$PATH # Finished adapting your PATH environment variable for use with MacPorts. On Thu, Jan 20, 2011 at 1:28 PM, Erik Iverson mailto:er...@ccbr.umn.edu>> wrote: Bryan Emrys wrote: Hi, Now getting an error message: /bin/bash: d

Re: [Orgmode] C-c a t shows empty list

2011-01-20 Thread Erik Iverson
Which version of Emacs / org-mode? Микола Стрєбков wrote: Hi orgsters, I started to use org-mode together with MobileOrg and everything was fine. But two days ago I realized that I'm unable to build neither agenda nor todo lists from my org files. Problem occurred on both Emacs and my iPhone e

Re: [Orgmode] C-c a t shows empty list

2011-01-20 Thread Erik Iverson
Микола Стрєбков wrote: Hi On 20 січ. 2011, at 23:43, Erik Iverson wrote: Which version of Emacs / org-mode? Hmm... Emacs 23.2 OS X, "M-x org-info" shows docs for 6.33 but I have installed version 7.4... Does M-x org-version report the correct version? The latest org-mode in

Re: [Orgmode] [OT] emacsclient -t (was Re: [OT] Have you also got hooked by Vim?)

2011-01-21 Thread Erik Iverson
Jeff Horn wrote: On Thu, Jan 20, 2011 at 11:00 AM, Eric S Fraga wrote: Matt Lundin writes: Jeff Horn writes: On Wed, Jan 19, 2011 at 9:51 PM, Matt Lundin wrote: alias emacs="emacsclient -t -a /usr/bin/emacs" Thanks for sharing this. My manual doesn't mention the -t flag. What does it

[Orgmode] changing the time of one instance of a recurring appointment

2010-02-12 Thread Erik Iverson
to 10:30. How would you handle that? Just simply change the 11:30 to 10:30 and remember to change it back next week? Add a new one-off appointment for 10:30 that day and ignore the 11:30 one on your agenda? Or is there some way to do this built into org-mode already? Thanks a l

[Orgmode] org-babel with R, scrolling an inferior ESS process

2010-02-16 Thread Erik Iverson
umed comint-mode should do the right thing, so I'm not sure where the issue is! Even if this can't be changed, I think org-babel is going to be a great use to me, thank you! Best Regards, Erik Iverson ___ Emacs-orgmode mailing list Pleas

Re: [Orgmode] org-babel with R, scrolling an inferior ESS process

2010-02-18 Thread Erik Iverson
Hello, Can anyone 1) replicate that you don't see the scrolling, even with the comint-scroll-to-bottom-on-output variable set to 't'? Yes, this has been on my todo list for a while! Definitely time to fix it. Great, I'd be happy to test out the code when it's ready! 2) suggest a way to

Re: [Orgmode] [babel] multiple result outputs from function

2010-03-16 Thread Erik Iverson
Graham - Graham Smith wrote: Below is a function that I am trying to run in orgmode/babel. It seems to run OK, but instead of printing out three values, its only printing the final result. Once again, i would appreciate some help with what I am missing. Thanks, Graham #+srcname: CI_functio

Re: [Orgmode] hyperlink to IMAP email

2010-03-26 Thread Erik Iverson
I presently use thunderbird as my email client and it doesn't support this, I've looked at several other linux email clients and they do not support this either. Does anyone know of an email client that can be invoked from the command line to open up at a specific IMAP email? How do the org-m

Re: [Orgmode] Turn off "pushed to kill ring and clipboard" exporting HTML

2010-04-07 Thread Erik Iverson
Dan Davison wrote: Xin Shi writes: Hello, When exporting to HTML, the default behavior is to "pushed to kill ring and clipboard". As shown in the message: HTML export done, pushed to kill ring and clipboard Are there any way to turn off this push? (setq org-export-copy-to-kill-ring nil)

Re: [Orgmode] [org-babel] suggestions for using tikz() graphic device with org-babel-R

2010-04-14 Thread Erik Iverson
But, back to your question. What does the R block return? - if it returns the path to a file, then you can use :results file to insert a link to that file in your org-mode buffer, or you can wrap the path to that file in an include with something like the following #+source: graph-gener

Re: [Orgmode] Re: [Babel] Macro for begin_src?

2010-04-16 Thread Erik Iverson
http://doc.norang.ca/org-mode.html#Yasnippets If anyone else has a different macro set up, I'm still interested in hearing your solutions. Nope, yasnippet is the way to go I think! ___ Emacs-orgmode mailing list Please use `Reply All' to send

Re: [Orgmode] Re: [Babel] Macro for begin_src?

2010-04-17 Thread Erik Iverson
I'm guessing what you really want there is (set (make-local-variable 'yas/trigger-key) [tab]) instead of > (make-variable-buffer-local 'yas/trigger-key) > (setq yas/trigger-key [tab]) Hmmm. Do you guys un-map your TAB key so that it doesn't

Re: [Orgmode] A shorter manual

2010-04-28 Thread Erik Iverson
Carsten Dominik wrote: Dear all, with the Org-mode manual moving toward 200 pages, I am starting to worry that people with stop in their tracks when considering Org-mode, just because of the sheer size of the manual. So I did a little experiment. I took the manual and stripped everything wh

Re: [Orgmode] [babel] Future of Org-babel?

2010-05-06 Thread Erik Iverson
My pie-in-the-sky extension of this dream would be to have Org-babel firmly ground in some virtual machine (maybe Guile's if Emacs is ported to Guile), in such a way that the byte-code of the VM becomes the lowest common denominator of all Org-babel languages. This would allow for seamless inte

[Orgmode] [babel] showing image of latex code results produced from an R code block

2010-05-13 Thread Erik Iverson
Hello, consider the following org-mode file: = * R returning LaTeX for display I have an R function that generates LaTeX code. I would like the resulting LaTeX to be displayed in an inline image in the org-buffer #+begin_src R lf <- function(

Re: [Orgmode] [babel] showing image of latex code results produced from an R code block

2010-05-14 Thread Erik Iverson
Solution below! Erik Iverson wrote: Hello, consider the following org-mode file: = * R returning LaTeX for display I have an R function that generates LaTeX code. I would like the resulting LaTeX to be displayed in an inline image in the org

Re: [Orgmode] Latex export bug? Odd behavior with figures...

2010-05-25 Thread Erik Iverson
### latex order ## I've inspected the generated .tex file and this shows up where expected in both picture instances: \begin{figure}[htb] \centering \includegraphics[width=12cm]{/home/jwhendy/Desktop/file[1/2].pdf} \caption{text here} \end{figure} I have generated a pdf

[Orgmode] [babel] possible bug in org-babel-execute-buffer?

2010-05-26 Thread Erik Iverson
Hello, I am using Emacs 23.1, orgmode pulled from git just an hour ago, but I noticed the following issue on a version pulled about a week ago, too. I don't know if it ever worked as I expect. These development versions have C-c C-v as the babel prefix keys, so if you are using a stable vers

Re: [Orgmode] [babel] possible bug in org-babel-execute-buffer?

2010-05-26 Thread Erik Iverson
Eric Schulte wrote: Hi Erik, Thanks for the report, this should now be fixed in the latest git HEAD, please let me know if the problem persists. Best -- Eric Looks good on the test file I had included in my initial report, thank you very much. When I get back to work tomorrow, I will try it

[Orgmode] [babel] buffer-wide settings for R graphical header arguments

2010-05-27 Thread Erik Iverson
Hello, You can specify graphical header args in source blocks for R blocks that produce graphical output, e.g.: #+BEGIN_SRC R :file output.png :width 720 You can also set buffer-wide options with the following syntax, for example, with the tangle header argument. #+PROPERTY: tangle yes H

Re: [Orgmode] [babel] `org-babel-tangle-w-comments' controls comment insertion in tangled code

2010-05-28 Thread Erik Iverson
Eric Schulte wrote: Hi, The insertion of automatically generated comments in tangled source code is now controlled by the new `org-babel-tangle-w-comments' variable. Setting this variable to non-nil will allow org-babel to insert comments for those languages with comment support. Can you bri

Re: [Orgmode] [babel] `org-babel-tangle-w-comments' controls comment insertion in tangled code

2010-05-28 Thread Erik Iverson
## [[file:~/private/R-org-babel/test.org::*cube%20lets%20go%20to%20the][block-2]] cube <- function(x) { # a test comment x * x * x * x } ## block-2 ends here So, you mean that all three of the comments would no longer appear by default? Or you mean that only my inline function commen

Re: [Orgmode] [babel] `org-babel-tangle-w-comments' controls comment insertion in tangled code

2010-05-28 Thread Erik Iverson
One more idea I had was that it might be interesting to be able to maintain properties for headlines that indicate the headline/body should be included as a comment in a specific source file. The reason I say this is that even if I write my code in org-mode, and in effect comment the code using

Re: [Orgmode] [babel] `org-babel-tangle-w-comments' controls comment insertion in tangled code

2010-05-28 Thread Erik Iverson
Thomas S. Dye wrote: Hi Erik, If the proposed functionality places comments in the source code in whatever order they appear in the org-mode file, then the result will likely frustrate literate programming efforts that rearrange code blocks on tangling. Yes, thank you for pointing that ou

[Orgmode] [babel] writing my .Rprofile in orgmode, issue with emacsclient

2010-06-01 Thread Erik Iverson
#+results: : emacsclient: could not get terminal name ...further output... if my source block has :results output as opposed to :results value. I just don't get why my setup works with M-x R but not with org-babel-execute-src-block, there is some interaction between those two and I can

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Erik Iverson
The idea is I want to be able to see the inline PNG image of my graph while writing, and when I export I'll point the latex exporter to the PDF. This provides a vector format for Latex, instead of a low resolution bitmap. Yes you can use PDF's as includes, and they look great because they are a

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Erik Iverson
#+begin_src R :results file :var basename="myplot" a <- 1:4 pngfile <- sprintf("%s.png", basename) pdffile <- sprintf("%s.pdf", basename) png(pngfile) plot(a) dev.off() pdf(pdffile) plot(a) dev.off() pngfile #+end_src I like this better, and I can use dev.copy

Re: [Orgmode] Re: org-babel-R export parameters

2010-06-07 Thread Erik Iverson
I personally find this useful because it allows me to use code blocks to generate results, and then when I'm content with the file I can set ":exports none" to avoid re-generating the file on every export -- while retaining the existing link keeps the file included in my export. I do see how th

[Orgmode] [babel] grid-based R graphical output with :results value

2010-06-08 Thread Erik Iverson
Hello, This is an FYI for those using org-babel-R with grid-based graphical systems. The documentation for org-babel-R says, "If a :file filename.ext header arg is provided to an R block, then graphical output from the source block is captured on disk, and the output of the source block is a

[Orgmode] simultaneous clocks?

2010-06-09 Thread Erik Iverson
Hello, Is there any concept of being able to run multiple, simultaneous clocks in org-mode. For example, I want one clock to track my total hours during the week at work, i.e., punch in and punch out. Then, while that clock is running, I would use the normal clocking functionality to keep t

[Orgmode] Re: simultaneous clocks?

2010-06-09 Thread Erik Iverson
Bernt Hansen wrote: Erik Iverson writes: Hello, Is there any concept of being able to run multiple, simultaneous clocks in org-mode. For example, I want one clock to track my total hours during the week at work, i.e., punch in and punch out. No. Org-mode clocking clocks a single task at

Re: [Orgmode] a better way with babel

2010-06-21 Thread Erik Iverson
This does produce the figure and long/short contents BUT ALSO produces this: #+results: r-nicedata [[file:ndata.pdf]] which upon export results in a link and consequently the plot appearing both in the figure and elsewhere. This second plot is unwelcome. I believe in the latest git versi

Re: [Orgmode] Lifehacker votes on TODO list managers

2010-06-25 Thread Erik Iverson
Carsten Dominik wrote: Hi everyone, Put a comment on Lifehacker http://lifehacker.com/5572129/best-to+do-list-manager with the content VOTE: Emacs Org-mode if you want to see Org-mode in the top 5 competition about TODO managers How can this even be called a 'competition' if org-mode

Re: [Orgmode] [org-babel] Does org-babel needs some simplification?

2010-06-28 Thread Erik Iverson
Hello! Whenever I come back to org-babel, it takes me a huge amount of time to find myself back again in the syntax. Often I spend a day or two heavily reading the website and manual again to figure out how to make it working. There are so many options. tangle files, results, scripting mode,

Re: [Orgmode] [babel] Evaluating all source blocks in a document?

2010-06-30 Thread Erik Iverson
Hello, On Wed, Jun 30, 2010 at 01:35:04PM +0200, Rainer M Krug wrote: > Hi > > I use Org-babel for literate programming in R, but the tangling takes quite > long. Therefore my question: as it is possible to evaluate a single code > block, is it possible to ev

Re: [Orgmode] Good way to try new org-mode code?

2010-06-30 Thread Erik Iverson
Is there a way to have emacs read the org-mode source code "on the fly" without having to run make, make install, etc? Is there a way to run new code without restarting Emacs? I think M-x org-reload is what you're after. ___ Emacs-orgmode mailin

Re: [Orgmode] hypermedia programming with babel

2010-07-05 Thread Erik Iverson
How can I help next? Babel in general is in need of some language-specific introductory tutorials, with the goal of laying out the basic usage plenty of examples covering simple use case e.g. - author a shell script which can be tangled out to an executable - simple processing of data in tab

Re: [Orgmode] Org-babel init

2010-07-12 Thread Erik Iverson
You need to see: http://eschulte.github.com/babel-dev/DONE-document-configuration-changes-for-Babel-integration.html Jordi Inglada wrote: Hi all, I am having the same problem as this user here: http://www.mail-archive.com/emacs-orgmode@gnu.org/msg17498.html and the contrib/lisp directory is

Re: [Orgmode] Help: Agenda not working anymore

2010-07-12 Thread Erik Iverson
Could be related: I just pulled latest from git this morning: my agenda seems to compile, but I get in the *Messages* buffer: concat: Wrong type argument: listp, "* Letters" Backtrace follows: Debugger entered--Lisp error: (wrong-type-argument listp "* Letters") nth(0 "* Letters") (conc

Re: [Orgmode] Wiki-like creating links on the fly for org

2010-07-12 Thread Erik Iverson
Perhaps I am confused, but have you tried radio targets? http://orgmode.org/org.html#Radio-targets Marcelo de Moraes Serpa wrote: Hey all! I used to be an avid user of WikiDPad, and I loved the way it automatically (or manually, using [ ]) created links and files to these links (CamelCase) fo

[Orgmode] word wrap preferences in org-mode buffers

2010-07-16 Thread Erik Iverson
Hello, As I use org-mode more and more for actually writing things, I'm wondering what your favorite Emacs word/line-wrapping mode is. Basically, I see two main ways of doing this, auto-fill-mode and visual-line-mode. Any others that you all use? If you use auto-fill-mode or visual-line-mo

[Orgmode] inline image display not working when org-indent-mode active

2010-07-16 Thread Erik Iverson
Hello! Just pulled the latest org-mode from git. I've upgraded to Emacs 23.2 so that org-indent-mode works properly. However, when org-indent-mode is active, it seems that inline images (C-c C-x C-v) do not work properly. They show up for a brief time (< 1 second) and then promptly return to

Re: [Orgmode] inline image display not working when org-indent-mode active

2010-07-17 Thread Erik Iverson
On 07/17/2010 12:14 AM, Erik Iverson wrote: Hello! Just pulled the latest org-mode from git. I've upgraded to Emacs 23.2 so that org-indent-mode works properly. However, when org-indent-mode is active, it seems that inline images (C-c C-x C-v) do not work properly. They show up for a

Re: [Orgmode] Re: Org-mode release 7.01

2010-07-19 Thread Erik Iverson
I assumed I had to switch to the maint branch in order to get the 7.01 release. How could I have done this while staying on the master branch? Basically, as long as you're on master, you'll always have the latest and greatest, which may or may not be what you want. At certain times, inclu

Re: [Orgmode] Development setup (was: Org-mode release 7.01)

2010-07-19 Thread Erik Iverson
Suggestions: 1.) Could the original mail (the one including the actual patch, even if modified) be attached to the autogenerated email, please? This should be at the very bottom of the mail, because of length and priority. 2.) And how about the subject? The OP's subject is wh

Re: [Orgmode] babel versionitis?

2010-08-03 Thread Erik Iverson
Correct, about a month ago: http://eschulte.github.com/babel-dev/DONE-document-configuration-changes-for-Babel-integration.html On 08/03/2010 05:59 AM, Rustom Mody wrote: In Bernt Hansen's Organize your life in plain text he has (require 'org-babel-init) (require 'org-babel-ditaa) (org-babel

Re: [Orgmode] Re: [PATCH] Mode-specific fontification of babel source blocks

2010-08-03 Thread Erik Iverson
On 08/03/2010 06:14 PM, David O'Toole wrote: I've placed a screenshot of the fontification here: http://imagebin.ca/view/iRVK_as7.html Wow, great job. I once hacked something horrible together that involved several tricks to actually change the mode of the buffer when entering a source bloc

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