Re: [O] odd/unexpected behavior with Python src blocks

2014-09-29 Thread John Kitchin
In case anyone else is interested, here is a workaround of sorts to capture stderr in a python block: https://github.com/jkitchin/pycse/blob/master/pycse/sandbox.py You use this module to redefine stdout and stderr. You basically run python like this: #+BEGIN_SRC emacs-lisp (setq org-babel-pyth

Re: [O] odd/unexpected behavior with Python src blocks

2014-09-29 Thread Instructor account
Indeed, this passes by org-babel because stderr is not captured, and scipy does what you suggest. I guess this happens inside compiled c/Fortran code since there is nothing catching it in the odeint python function doing that. Thanks, I will try to bring it up on the scipy list. Aaron Ecay writ

Re: [O] odd/unexpected behavior with Python src blocks

2014-09-28 Thread Aaron Ecay
Hi John, 2014ko irailak 28an, John Kitchin-ek idatzi zuen: [...] > I am not sure why this happens, but it seems like incorrect behavior to > me. In the first case, python exits with a non-zero exit code, whereas in the second it exits with a zero code (i.e. successful exit), and prints the matr