Re: [Orgmode] Re: problem with babel and R

2010-08-26 Thread Eric Schulte
Oh no! It appears this solution may have been too clever for it's own good. Thanks for suggesting ":results silent" as an additional default header argument, that appears to fixed this weird behavior. I've just pushed up that fix. Cheers -- Eric David Hajage writes: > One comment: > > When I

Re: [Orgmode] Re: problem with babel and R

2010-08-26 Thread David Hajage
One comment: When I execute all the buffer (org-babel-execute-buffer), the result is: #+begin_src R :results output org :exports both library(ascii) options(asciiType = "org") ascii(head(esoph, 3)) #+end_src #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols | |--

Re: [Orgmode] Re: problem with babel and R

2010-08-26 Thread David Hajage
Oups, I forgot ob-org in my .emacs... OK, now, really sorry for this. David On Thu, Aug 26, 2010 at 22:20, David Hajage wrote: > I am so sorry to bother you again, but I must miss something. > > When I write: > > #+begin_src R :results output org :exports both > library(ascii) > options(asciiTy

Re: [Orgmode] Re: problem with babel and R

2010-08-26 Thread David Hajage
I am so sorry to bother you again, but I must miss something. When I write: #+begin_src R :results output org :exports both library(ascii) options(asciiType = "org") ascii(head(esoph)) #+end_src The results is: #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols |

Re: [Orgmode] Re: problem with babel and R

2010-08-26 Thread Eric Schulte
Hi, A fix to this issue has been pushed up to the repository. As can now be read in the documentation of the `org-babel-insert-result' function [1], there is now a subtle distinction between ":results org" and ":results raw", where ":results org" will wrap code block results in a "begin_src org"

Re: [Orgmode] Re: problem with babel and R

2010-08-18 Thread Eric Schulte
Hi David, "#+end_results: foo" (or some derivative syntax) sounds like a good idea, I'll add it to the Babel task list. Thanks -- Eric David Hajage writes: > OK, I understand that using ":results org", the results is not altered, > there is no post processing. But I don't want a post processin

Re: [Orgmode] Re: problem with babel and R

2010-08-17 Thread David Hajage
OK, I understand that using ":results org", the results is not altered, there is no post processing. But I don't want a post processing, I would like a way to tell babel where is the begining *and the end* of the output produces by a particular R source block. I think an "#+end_results: foo" at the

[Orgmode] Re: problem with babel and R

2010-08-17 Thread Tom Short
Eric Schulte gmail.com> writes: > Under normal usage w/o this header argument, results are either tabular > or are textual. If tabular a single table can easily be recognized and > handled, if textual they are normally enclosed in a block (example, > html, latex, etc...), the block then allows f

Re: [Orgmode] Re: problem with babel and R

2010-08-17 Thread Eric Schulte
Hi David, David Hajage writes: > Thank you very much for your answer. > My pleasure > > But when I run the following code directly into R, no extra lines is >added > by the ascii function: >> library(ascii) > Le chargement a nécessité le package : proto >> options(asciiType = "org") >> ascii(h

Re: [Orgmode] Re: problem with babel and R

2010-08-17 Thread David Hajage
Thank you very much for your answer. But when I run the following code directly into R, no extra lines is added by the ascii function: > library(ascii) Le chargement a nécessité le package : proto > options(asciiType = "org") > ascii(head(esoph)) # no extra line | | agegp | alcgp | tobgp

Re: [Orgmode] Re: problem with babel and R

2010-08-17 Thread Eric Schulte
Hi David, It seems that the problem here is in the ascii package. It is inserting an empty line at the beginning of your table, so that the table is not snugly sitting under the #+results foo tag, because of this the table isn't seen as results and is not replaced -- if you delete that space then

[Orgmode] Re: problem with babel and R

2010-08-17 Thread David Hajage
I tried the code with the last development version of org-mode: #+srcname: foo #+begin_src R :session *R* :results output org replace library(ascii) options(asciiType = "org") ascii(head(esoph)) #+end_src #+results: foo | | agegp | alcgp | tobgp| ncases | ncontrols | |---+--