Re: ob-octave: improve MATLAB support

2025-04-22 Thread John C
Hi I’ve been so busy with work. The last round of feedback was to split matlab support from octave, which I started but didn’t get very far. I’ll try to get back to this soon. Sorry for the delay, John On Tue, Apr 22, 2025 at 1:17 PM Ihor Radchenko wrote: > Ihor Radchenko writes: > >

Re: Patch to add a new org-archive hook and context info type

2025-04-21 Thread John Wiegley
it/commit/?id=9f3ee0fa5e Thank you so much, Ihor. My apologies for letting life get in the way on this one. You’ve now liberated me from continuing to maintain a local fork. -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com

[BUG] intermittent invalid search bound error [9.6.15 (release_9.6.15 @ /tmp/.mount_Emacs-NcE3UV/share/emacs/29.4/lisp/org/)]

2025-01-24 Thread John
ok '(org-noter-pdftools--check-link) org-link-elisp-confirm-function 'yes-or-no-p org-directory "/home/john/Documents/Notes" org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 "\n\n(fn ENTRY)"] org-pdftools-get-desc-function 'org-pdfto

Re: ob-octave: improve MATLAB support

2025-01-02 Thread John C
Attaching the updated org-matlab.patch On Thu, Jan 2, 2025 at 6:55 PM John C wrote: > Hi > > Thanks for the feedback. See updated org-matlab.patch. Note > code evaluation will now error out when using an out-of-date matlab-mode > (rather than generating a warning) because when

Re: ob-octave: improve MATLAB support

2025-01-02 Thread John C
to extract code blocks from testing/examples/*.org files for on-the-fly testing using org-test-with-temp-text. * etc/ORG-NEWS (New functions and changes in function arguments): Added entry "ob-octave: improved MATLAB support" Thanks John On Sun, Dec 29, 2024 at 2:41 AM Ihor Radche

Re: ob-octave: improve MATLAB support

2024-12-28 Thread John C
ut now supports an optional STRIP-REGEXPS which can be used to remove content from the returned output. * etc/ORG-NEWS (New functions and changes in function arguments): Added entry "ob-octave: improved MATLAB support" Thanks John - *Ihor Radchenko * Sun, Dec 22, 2024 at 11:24

Re: [ANN] Ihor is now officially the new Org maintainer

2024-12-07 Thread John Wiegley
strong. I’ve been using it since the beginning, and am constantly impressed by how vibrant the contributions and community have remained all throughout that time. -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com 60E1 46C4 BD1A 7AC1 4BA2

Re: ob-octave: improve MATLAB support

2024-11-15 Thread John C
I received the FSF form to assign and will be sending that in soon. On Wed, Nov 13, 2024 at 2:10 PM John C wrote: > > Hi > > Thanks for the feedback. I incorporated some of your suggestions for > org-mode. I'll add the examples to https://git.sr.ht/~bzg/worg once > the cha

Re: ob-octave: improve MATLAB support

2024-11-13 Thread John C
ings working. When org is updated, Emacs-MATLAB-Mode will automatically not advise org. See updated attach patch. I have yet to hear back from FSF on the copyright assignment. I'm happy to sign this, so if you can help, that would be good. Thanks John On Sat, Nov 9, 2024 at 4:31 AM Ihor Radch

ob-octave: improve MATLAB support

2024-11-08 Thread John C
AB support" Note, I have sent in the paper work for the FSF copyright assignment. Thanks John diff --git a/etc/ORG-NEWS b/etc/ORG-NEWS index 5d421172f..a086ce792 100644 --- a/etc/ORG-NEWS +++ b/etc/ORG-NEWS @@ -162,6 +162,84 @@ bibliography format requires them to be written in title-case.

Patch to add a new org-archive hook and context info type

2024-11-06 Thread John Wiegley
not deleted, there stands a better chance that the original context of the archived entry can be restored. John --- a/lisp/org-archive.el +++ b/lisp/org-archive.el @@ -144,13 +144,26 @@ information." (const :tag "Priority" priority) (const :tag "I

Re: ob-octave.el - org-babel-matlab-with-emacs-link

2024-10-25 Thread John Ciolfi
Thanks. I'll prepare a patch and send it along for consideration. From: Leo Butler Sent: Thursday, October 24, 2024 10:50 AM To: John Ciolfi Cc: emacs-orgmode@gnu.org Subject: Re: ob-octave.el - org-babel-matlab-with-emacs-link Hi John, Have you had a lo

Re: ob-octave.el - org-babel-matlab-with-emacs-link

2024-10-24 Thread John Ciolfi
To use org with MATLAB, one needs to advise the org functions to change their behavior, and I'll like to eliminate that workaround, so I'd like to propose some changes, but am not clear on how to propose those changes. Thanks John ____ From: John Ci

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2024-09-03 Thread Helly, John
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2024-09-02 Thread Helly, John
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Archiving always adds a newline before entries

2024-08-26 Thread John Wiegley
example. Meanwhile, I corrected the behavior with advice. Not ideal, since it affects all cases of pasting subtrees, but it works well enough: (advice-add 'org-paste-subtree :before #'(lambda (_) (delete-blank-lines))) -- John Wiegley GPG fingerprint = 4710 CF98 AF9B

Re: Bug?: Undefined reference in ox-latex ?

2024-08-05 Thread John Kitchin
.6.6 was installed on the system with Emacs 29.4. Org > 9.7.9 was installed via package-install in an "emacs -q" startup. > > Any way of tracing this down? > > (I'm also having a problem with org-asciidoc, but I think that's a > separate issue.) > > -- >

Re: Agenda export to ics file

2024-06-09 Thread John Helly
nt of time. J. On 6/9/24 01:52, Ihor Radchenko wrote: John Helly writes: So, even this MWE, the export to *.ics does not work as expected. The test.ics file has no events when M-x org-icalendar-export-to-ics is invoked. =  Contents of test.org li

Re: Agenda export to ics file

2024-06-09 Thread John Helly
ing around headline ** TODO This is a event with a Deadline DEADLINE: <2024-06-20 Thu -30d> On 6/9/24 01:52, Ihor Radchenko wrote: John Helly writes: So, even this MWE, the export to *.ics does not work as expected. The test.ics file has no events when M-x org-icalendar-export-to

Re: Agenda export to ics file

2024-06-08 Thread John Helly
6/8/24 10:38, Ihor Radchenko wrote: John Helly writes: I modified the variable specification to be: -*- org-icalendar-use-deadline: event-if-not-todo;  -*- and get the following error: 'Wrong type argument: listp, event-if-not-todo' That's because the value should be a list.

Re: Agenda export to ics file

2024-06-08 Thread John Helly
Well, it doesn't seem to work as expected.  I'll create a test setup and see if I can isolate what is not working with just a few TODOs. J. On 6/8/24 10:44, John Helly wrote: Mahalo. That allowed the command (org-icalendar-export-to-ics) to succeed but it didn't produce the

Re: Agenda export to ics file

2024-06-08 Thread John Helly
Mahalo. That allowed the command (org-icalendar-export-to-ics) to succeed but it didn't produce the desired results.  I'll try adding other values and see if the situation improves. J. On 6/8/24 10:38, Ihor Radchenko wrote: John Helly writes: I modified the variable specifica

Re: Agenda export to ics file

2024-06-08 Thread John Helly
m to be able to find anything that tells me what the correct syntax should be. Any further advice is welcome. J. On 6/8/24 09:20, Ihor Radchenko wrote: John Helly writes: Sure.  Thanks for the reply. 1) I put this line at the top of the org file -*- org-icalendar-use-deadline: t;  -*

Re: Agenda export to ics file

2024-06-07 Thread John Helly
Any help appreciated. J. On 6/7/24 05:06, Ihor Radchenko wrote: John Helly writes: I'm a long-time user of emacs, org-mode for about 10 years but cannot figure out how to export DEADLINE events from org-agenda to org-icalendar-export-to-ics. I've found references to setting the o

Agenda export to ics file

2024-06-06 Thread John Helly
incantation to do that. Can someone please point me in the right direction?  Everything seems to lead a dead-end or some other complication. Mahalo. J. -- John Helly / San Diego Supercomputer Center / Scripps Institution of Oceanography https://www.sdsc.edu/~hellyj / 808 205 9882 / 760 8408660

Re: Managing acronyms in an Org-mode document

2024-05-28 Thread John Kitchin
sic ideas. > > Best, /PA > > -- > Fragen sind nicht da, um beantwortet zu werden, > Fragen sind da um gestellt zu werden > Georg Kreisler > > Headaches with a Juju log: > unit-basic-16: 09:17:36 WARNING juju.worker.uniter.operation we should run > a leader-deposed ho

[BUG] Stray divs in HTML export [9.6.15 (release_9.6.15 @ /home/jm/.local/share/emacs/30.0.50/lisp/org/)]

2024-03-22 Thread john muhl
The closing s inside HTML comment blocks appear outside the comment which makes the exported HTML invalid. For example: #+title: Stray div demo Hello. #+html: Goodbye. Produces this HTML (cleaned up to make it easier to read, see attached for original files): Hello. Goodbye.

Re: Suggestion for org-agenda-list: pre-open org-agenda-files

2024-03-16 Thread John Wiegley
Understood, I just haven’t had the time to dig into this. I’ll let you know once I find out. John On Sat, Mar 16, 2024, at 12:46 AM, Ihor Radchenko wrote: > Ihor Radchenko writes: > >> Ihor Radchenko writes: >> >>> So, may you dig a bit further and check why

org-agenda-filter-by-category not working in block agendas due to inconsistent truncation

2024-02-22 Thread John Mathena
ral, it seems like org-agenda-filter-by-category should work based on the actual category of an item, rather than its display in the buffer, which I find unexpected. I wasn't able to find any configuration to change this behavior, but if I'm missing it, I'd appreciate a point in the right direction! This was recreated on GNU Emacs 30.0.50 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.41, cairo version 1.18.0) of 2024-02-14, with Org mode version 9.6.15 (release_9.6.15 @ /usr/share/emacs/30.0.50/lisp/org/) Best, John

Re: interaction of fontified calendar entries and org-read-date

2024-02-21 Thread John Kitchin
Awesome work! Thanks for tracking that down! On Wed, Feb 21, 2024 at 6:17 AM Ihor Radchenko wrote: > John Kitchin writes: > > > However, if I edebug `calendar-make-temp-face' and step through each > line, > > then it works the same as using a face. And, after that it

Re: interaction of fontified calendar entries and org-read-date

2024-02-14 Thread John Kitchin
(add-hook 'calendar-today-visible-hook mark-calendar) (org-read-date)) I can live with that solution. Thanks for the assist! On Wed, Feb 14, 2024 at 3:14 PM Ihor Radchenko wrote: > John Kitchin writes: > > > why does it work with a face though? > > It really d

Re: interaction of fontified calendar entries and org-read-date

2024-02-14 Thread John Kitchin
why does it work with a face though? On Wed, Feb 14, 2024 at 10:00 AM Ihor Radchenko wrote: > John Kitchin writes: > > > This slightly different code (differs only in assigning an anonymous face > > instead of an actual face doesn't do that exactly. Today is still marke

interaction of fontified calendar entries and org-read-date

2024-02-13 Thread John Kitchin
video attribute from the face that isn't present in the anonymous face, but I haven't been able to figure out where that comes in. Any suggestions for either how to fix this, or another approach to coloring the days in the calendar? -- John --- Profe

Suggestion for org-agenda-list: pre-open org-agenda-files

2023-12-04 Thread John Wiegley
n visiting Org entries from the Agenda. -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com 60E1 46C4 BD1A 7AC1 4BA2

[BUG] org-agenda column view error: wrong type markerp, nil [9.6.9 ( @ /path/to/org-9.6.9/)]

2023-10-02 Thread John Borwick
uild 1, x86_64-apple-darwin18.7.0, NS appkit-1671.60 Version 10.14.6 (Build 18G95)) of 2023-02-22 Package: Org mode version 9.6.9 ( @ /path/to/org-9.6.9/) -- John Borwick

Re: What do you recommend for acronyms in org-mode?

2023-08-28 Thread John Kitchin
bibtex-completion though. On Sat, Aug 26, 2023 at 9:01 PM Maske wrote: > Hi John! > > I was using org-ref some time ago, but it seemed to get emacs slower, in > my low resources PC. > > Would you give me some tips to make org-ref lighter? > > Best regards > > 27

Re: [POLL] [BUG] Inverse behavior from \ [9.6.4 (release_9.6.4-1-g76cf21 @ /Users/johnw/.emacs.d/lisp/org-mode/lisp/)]

2023-08-16 Thread John Wiegley
>>>>> Ihor Radchenko writes: > No further votes. > I am thus leaving the current behavior. > Closed, poll. > Canceled, bug. Understood, thank you very much for the consideration. I’m training my fingers to the current behavoir. -- John Wiegley GPG f

Re: [POLL] [BUG] Inverse behavior from \ [9.6.4 (release_9.6.4-1-g76cf21 @ /Users/johnw/.emacs.d/lisp/org-mode/lisp/)]

2023-06-14 Thread John Wiegley
havior”, then the muscle memory needed is ‘\ - ‘ rather than ‘\ ‘. Still feels odd for space to mean anything rather than nothing, though… I mean, space is empty, right? :) -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com 60E1 46C4 BD1A 7AC1 4BA2

Re: [POLL] [BUG] Inverse behavior from \ [9.6.4 (release_9.6.4-1-g76cf21 @ /Users/johnw/.emacs.d/lisp/org-mode/lisp/)]

2023-06-13 Thread John Wiegley
usually goes with agenda, consequences of some changes are not IR> always straightforward. Since my data should all still be compatible with the old version I was using, I’ll see if I can bisect this. I know I was used to that binding, but I’m not 100% certain it wasn’t due to extenuating factors

Re: [POLL] [BUG] Inverse behavior from \ [9.6.4 (release_9.6.4-1-g76cf21 @ /Users/johnw/.emacs.d/lisp/org-mode/lisp/)]

2023-06-12 Thread John Wiegley
ged entries, which is why I had that expectations. -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com 60E1 46C4 BD1A 7AC1 4BA2

[BUG] Inverse behavior from \ [9.6.4 (release_9.6.4-1-g76cf21 @ /Users/johnw/.emacs.d/lisp/org-mode/lisp/)]

2023-06-11 Thread John Wiegley
AppKit 2299.6) Package: Org mode version 9.6.4 (release_9.6.4-1-g76cf21 @ /Users/johnw/.emacs.d/lisp/org-mode/lisp/) -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com 60E1 46C4 BD1A 7AC1 4BA2

adding rules for flyspell

2023-05-30 Thread John Kitchin
less desirable for many rules. does anyone do anything clever here? I am currently making a list of predicate functions, and a generic function that runs each one, but I wondered if there was another approach. thanks. -- John --- Professor John Kitchin (he/his

Re: org-ref-helm-insert-ref-link and latex src blocks

2023-05-30 Thread John Kitchin
eliver weapons to Ukraine's military. > I support the NATO membership of the Ukraine. > I support the EU membership of the Ukraine. > > https://addons.thunderbird.net/en-US/thunderbird/addon/gmail-conversation-view/ > > > -- John --- Professor John Kitchin (he/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 https://kitchingroup.cheme.cmu.edu https://pointbreezepubs.gumroad.com/ pycse bookstore

Re: org-latex-pdf-process as a lisp function?

2023-04-30 Thread John Kitchin
Thanks for this and the other one too! On Sun, Apr 30, 2023 at 12:41 PM Ihor Radchenko wrote: > John Kitchin writes: > > > The documentation for org-latex-pdf-process says that it can be a list of > > strings, or a lisp function. > > ... > > In org-compile-fi

org-latex-pdf-process as a lisp function?

2023-04-30 Thread John Kitchin
-compile-file-commands, I think this line ((pred functionp) process) should instead be ((pred functionp) (list process)) that seems to make it work for me. Org mode version 9.7-pre (release_9.6.4-337-geaf274 -- John --- Professor John Kitchin (he/his) Doherty Hall

Troubleshooting empty *Org PDF LaTeX Output*

2023-04-29 Thread John Kitchin
buf (erase-buffer)) (setq outfile (org-compile-file texfile process "pdf" (format "See %S for details" log-buf-name) log-buf spec)) (org-latex-compile--postprocess outfile log-buf snippet) ;; Return output file name. outfile)) WDYT? -- John

Re: [ANN] lisp/ob-tangle-sync.el

2023-04-26 Thread John Wiegley
om Emacs_conf to =~/.bashrc=, even if called MT> from =~/.bashrc= For the sake of consistency, perhaps import and export, rather than pull and export? And, great idea! -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com 60E1 46C4 BD1A 7AC1 4BA2

Re: Allowing :PROPERTIES: drawer to appear at the end of entries

2023-04-26 Thread John Wiegley
small change like this can lead to big headaches if not enough other people are actively using it. John On Wed, Apr 26, 2023, at 1:25 AM, John Wiegley wrote: >>>>>> "IR" == Ihor Radchenko writes: > > IR> Sorry, but I am against this feature. > IR> Th

Re: Allowing :PROPERTIES: drawer to appear at the end of entries

2023-04-26 Thread John Wiegley
//list.orgmode.org/orgmode/87oatek909@nicolasgoaziou.fr/ I should be able to choose to trade performance for layout. It's my data. Since this does not impair the performance of those who do not opt in for this feature, it seems an unnecessary restriction to prevent it. -- John Wiegley GPG f

Allowing :PROPERTIES: drawer to appear at the end of entries

2023-04-25 Thread John Wiegley
d (not org-allow-properties-at-end) + (looking-at org-property-drawer-re)) (goto-char (match-end 0)) (forward-line)) ;; When FULL is not nil, skip more. -- John Wiegley GPG fingerprint = 4710 CF98 AF9B 327B B80F http://newartisans.com 60E1 46C4 BD1A 7AC1 4BA2

Re: The meaning of / inverted in the agenda

2023-04-25 Thread John Wiegley
ou surmised. This is really quite strange, I'm not even sure how my configuration had led to an inversion of the tag filtering behavior. Anyway, I reverted that change and now all things are working fine. Sorry again for the noise. -- John Wiegley GPG fingerprint = 4710 CF98

Re: The meaning of / inverted in the agenda

2023-04-25 Thread John Wiegley
>>>>> Ihor Radchenko writes: > "John Wiegley" writes: >> In previous version of Org-mode, I was used to "/ t" showing me only >> entries that matched the tag keyed by 't'. Now it hides them instead. > May you please provide a repro

The meaning of / inverted in the agenda

2023-04-25 Thread John Wiegley
mulate current nil))) (org-agenda-filter-apply org-agenda-tag-filter 'tag expand)) (t (error "Invalid tag selection character %c" char) The documentation for '/' says that "Keep only those lines in the agenda buffer that have a specific tag.", so I&#

Re: org-ref-formatted-citation-formats for books: ISBN

2023-04-01 Thread John Kitchin
is case-sensitive. > > -- > Ihor Radchenko // yantar92, > Org mode contributor, > Learn more about Org mode at <https://orgmode.org/>. > Support Org development at <https://liberapay.com/org-mode>, > or support my work at <https://liberapay.com/yantar92> >

Re: How to produce an org-ref citation from ivy-bibtex

2023-03-01 Thread John Kitchin
The best place to report org-ref issues is https://github.com/jkitchin/org-ref/issues. On Wed, Mar 1, 2023 at 7:25 AM Sven Bretfeld wrote: > Hi John > > Thank you very much again. Elegant solution, and it works. > > I just wonder why I seem to be the only one on the list who had

Re: How to produce an org-ref citation from ivy-bibtex

2023-02-28 Thread John Kitchin
You can try something like this #+BEGIN_SRC emacs-lisp (setq bibtex-completion-format-citation-functions '((org-mode . (lambda (keys) (org-ref-insert-cite-keys keys) "")) (latex-mode. bibtex-completion-format-citation-cite) (markdown-mode . bibtex-completion-format-c

Re: Links to external targets with (or despite) org-ref

2023-02-24 Thread John Kitchin
Wed, Feb 22, 2023 at 5:20 AM Sven Bretfeld wrote: > Hi John > > That's working well. Thank you very much. And thousand thanks for > org-ref in general. > > Sven > > Am Mon, Feb 20, 2023 at 01:07:49PM -0500 schrieb John Kitchin: > > The quickest thing might be to

Re: Links to external targets with (or despite) org-ref

2023-02-20 Thread John Kitchin
The quickest thing might be to remove the store properties on the ref links. This should do it. #+BEGIN_SRC emacs-lisp (cl-loop for reflink in '("ref" "pageref" "nameref" "eqref" "autoref" "cref" "Cref" "crefrange" "Crefrange") do (setf (cdr (assoc reflink org-link-parameters)) (org-plist-de

Filtering agenda clockreport not working?

2022-08-24 Thread John Young
, and it appears that any prefix argument is ignored. Am I misunderstanding something, or could this be a bug? Many thanks for your help. Best wishes, John

Re: org-ref 3 setup

2022-07-20 Thread John Kitchin
-ref-preprocessing (backend) (unless (eq backend 'latex) (org-ref-csl-preprocess-buffer backend))) (setq org-export-before-parsing-hook '(org-ref-preprocessing)) John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical E

Re: @string abbreviation in bib file not honored in (basic) org-cite [and a minimal working example with natbib]

2022-07-12 Thread John Kitchin
ain a built-in bibtex parser with proper @string > support. > OTOH, a small correction: as far as I can see, oc-natbib and > oc-bibtex (and oc-biblatex) do not parse bib(la)tex files at all, > since they simply transform Org citation and bibliography commands to >

Re: [PATCH] oc-csl: Add support for nocite citations

2022-07-03 Thread John Kitchin
still do not understand. AFAIK, \nocite{*} is not a > valid LaTeX command. > > Best, > Ihor > > -- John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412

Re: We have asynchronous sessions, why have anything else?

2022-06-27 Thread John Kitchin
tweaks around the edges. > > To some extent, I see the current babel implementation as similar to a > prototype. It has worked well and we have learnt a lot about what people > want to use it for and the type of functionality they are wanting and > what some of the core challenges a

[BUG] org parser error [9.5.1 (release_9.5.1-256-gf1929a @ /Users/raymondjohn/org-mode/lisp/)]

2022-06-26 Thread Raymond John Abayan
Remember to cover the basics, that is, what you expected to happen and what in fact did happen. You don't know how to make a good report? See https://orgmode.org/manual/Feedback.html#Feedback Your bug report will be posted to the Org mailing list. ---

Re: org-ref3 export html with references of pages

2022-06-25 Thread John Kitchin
this output for me. You have to export it with C-c C-e rh to use the org-ref exporter. [image: image.png] John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-

Re: Abbreviations support

2022-06-04 Thread John Kitchin
; acro-like support. Perhaps even support for a central abbreviations file. > Hmm, I > may think of trying a small MVP for that this weekend. > > All the best, > Timothy > -- John --- Professor John Kitchin (he/him/his) Dohert

Re: Trouble producing nicely aligned org tables from emacs-jupyter code blocks using latest org version

2022-05-18 Thread John Kitchin
ment-parse often. John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Wed, May 18, 2022 at 4:57 PM Richa

Re: Trouble producing nicely aligned org tables from emacs-jupyter code blocks using latest org version

2022-05-18 Thread John Kitchin
I use a function in an after execute hook for this: https://github.com/jkitchin/scimax/blob/master/scimax-org.el#L205 This works on a subtree, which has been fine for me. You could adapt it to only work in the results section. John --- Professor John Kitchin (he

Re: How to stop results being hidden when using ":results drawer"?

2022-05-13 Thread John Kitchin
y org-show-entry has a hard-coded line to hide drawers in it. Ihor Radchenko writes: > John Kitchin writes: > >> This does not change anything for me. >> >> The function that causes folding for me is `org-entry-show'. Presumably >> because of this line: (or

Re: How to stop results being hidden when using ":results drawer"?

2022-05-12 Thread John Kitchin
ist.orgmode.org/80k0ar1lml@felesatra.moe/T/#u > > Does it help when you run > M-: (setq org-fold-core-first-unfold-functionsp nil) > before running the code block? > > Best, > Ihor -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu Pronouns: he/him/his

Re: How to stop results being hidden when using ":results drawer"?

2022-05-11 Thread John Kitchin
hm. what is xenops doing? That isn't a package I use, but my results drawers are also closed when opening a file. John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 1521

Re: Org-ref not working when exporting to LaTeX

2022-05-11 Thread John Kitchin
processor. John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Wed, May 11, 2022 at 2:15 PM Daniel Fleischer

Re: Citations using org-ref export to LaTeX incorrectly

2022-05-10 Thread John Kitchin
ve the fallback of using multiple [[cite:source][text::text]] > blocks, but I'd rather use the new syntax if it works. > > Thank you much! > > -- > Daniel Fleming > > -- John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [how to joint column/rows of tables that are in different files (id?)] (was: how to best correct exams (code matlab) using org mode (and tables))

2022-05-10 Thread John Kitchin
cols "Level" > #+END: > > Where the table uwe is located in a different file. However it seems > only to work for one table at the time, so if you have 20 tables in 20 > files that a bit complicated > > Any idea how to append column or rows from different ta

Re: how to best correct exams (code matlab) using org mode (and tables)

2022-05-09 Thread John Kitchin
; > #+begin_src > #+BEGIN: columnview :maxlevel 2 :skip-empty-rows t :indent nil :hlines 2 > :format "%5TODO(Status) %5Ap(Name) %5com(Comment) %5Ej1(Ej1/20) %5Ej2(Ej2/25) > %5Ej3(Ej3/55) %5Res(Result)" > #+END: > #+end_src > > What do others use? > &g

Re: Concatenate properties

2022-05-07 Thread John Kitchin
Where did you add that? John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Fri, May 6, 2022 at 11:40

Re: Concatenate properties

2022-05-07 Thread John Kitchin
oduce a variable similar to > org-use-property-inheritance where the user can customise how to > accumulate parent properties. > > Best, > Ihor > -- John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical

Re: Concatenate properties

2022-05-05 Thread John Kitchin
I believe this is hard coded in org-entry-get-with-inheritance. The fastest option would be an override advice with your own function that replaces (and value " ") with (and value ""), and maybe the two other " " with "". John --

Re: [the culprit]

2022-04-26 Thread John Kitchin
)) #+END_SRC if you call it as M-x my-put, it just uses org-set-property. If you call it as C-u M-x my-put, it inserts the property before the point. It does not check you are in a property drawer, which could be a good idea. John --- Professor John Kitchin

Re: org-cite styles don't allow * in them

2022-04-22 Thread John Kitchin
I agree. John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Fri, Apr 22, 2022 at 8:57 AM Bruce D'

Re: [PATCH] oc-basic: Detect malformed bibtex bibliographies

2022-04-20 Thread John Kitchin
I would see if you can cache the result and not do it more than needed; it can add a performance issue on large files. John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA

Re: org-cite styles don't allow * in them

2022-04-17 Thread John Kitchin
On Sun, Apr 17, 2022 at 9:18 AM Ihor Radchenko wrote: > John Kitchin writes: > > > I am also not a fan of using Unicode here and prefer a simple ascii > > asterisk. That works fine for me so far, but I am not a heavy user of > bold > > markup and citations. > >

Re: org-cite styles don't allow * in them

2022-04-17 Thread John Kitchin
y). > > However, I am not org-cite's maintainer. So, I would prefer to hear from > Nicolas before implementing anything myself. > > Best, > Ihor > -- John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Departm

Re: [BUG] org-cite does not support techreport, mastersthesis, phdthesis, and conference entries [9.5.2 (release_9.5.2-426-gf6813d @ /usr/share/emacs/site-lisp/org/)]

2022-04-08 Thread John Kitchin
e | Patent | Periodical | SuppPeriodical | Proceedings | MVProceedings | InProceedings | Reference | MVReference | InReference | Report | Software | Thesis | Unpublished | If you open your bibtex file and type C-h v bibtex-dialect, or check that in the Entry-Types menu you can see what the dialect

Re: org-cite styles don't allow * in them

2022-04-07 Thread John Kitchin
On Thu, Apr 7, 2022 at 12:17 AM Ihor Radchenko wrote: > "Bruce D'Arcus" writes: > > > On Sun, Apr 3, 2022 at 5:07 PM John Kitchin > wrote: > >> > >> I was looking into using latex commands as styles in org-cite, e.g. > >> > >>

Re: org-cite styles don't allow * in them

2022-04-05 Thread John Kitchin
users might also define links like cite:. John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Tue, Apr 5, 20

overlap between cite syntax and link activation

2022-04-03 Thread John Kitchin
"BARE LINK". I guess this means the activate-func is being used too aggressively. It looks like it is called after (re-search-forward org-link-any-re limit t). This does seem to match the cite syntax above. Does anyone else see this? John --- Professo

org-cite styles don't allow * in them

2022-04-03 Thread John Kitchin
I was looking into using latex commands as styles in org-cite, e.g. [cite/citet:@key]. That example works fine, but [cite/citet*:@key] is not allowed. Could that be allowed? John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical

Re: citations: org-cite vs org-ref 3.0

2022-03-30 Thread John Kitchin
Max Nikulin writes: > On 28/03/2022 20:16, Bruce D'Arcus wrote: >> On Mon, Mar 28, 2022 at 8:37 AM Max Nikulin wrote: >>> >>> John, in another message (Sun, 27 Mar 2022 13:00:40 -0400) >>> https://list.orgmode.org/m24k3jnq0k@andrew.cmu.edu you clear

Re: citations: org-cite vs org-ref 3.0

2022-03-27 Thread John Kitchin
Max Nikulin writes: > On 21/03/2022 18:51, John Kitchin wrote: >> citenum and bibentry are the only two I am not sure have a CSL analog. > > I read your messages once more and I should say that I feel some disagreement > of > this one (I removed most of it) and the earlie

Re: citations: org-cite vs org-ref 3.0

2022-03-27 Thread John Kitchin
Nicolas Goaziou writes: > Hello, > > John Kitchin writes: > >> I do not think it is productive for the community to say or consider it >> is a sad situation. Many good things have emerged from these >> discussions, even if it is not yet consensus on a soluti

Re: citations: org-cite vs org-ref 3.0

2022-03-27 Thread John Kitchin
nother topic, neither related to citations nor to > cross-references. > >> For citations some values may be passed to specific citation backend >> overriding default value derived from style. > > In that situation, you can define a new style specific to the citati

Re: citations: org-cite vs org-ref 3.0

2022-03-27 Thread John Kitchin
I have updated the readme in org-ref to indicate you can use both packages. Max Nikulin writes: > On 21/03/2022 18:51, John Kitchin wrote: >> Vikas Rawal writes: >>> >>> From the perspective of a user, this was only meant to express a >>> sentiment that

Re: [oc] provide style/citation preview?

2022-03-25 Thread John Kitchin
t; > https://github.com/andras-simonyi/org-cite-csl-activate > > I think he was hoping to incorporate that into the oc-csl processor at > some point, and that would indeed be another approach to in-buffer > previewing. > > The issue I have is more just generating the preview content

Re: citations: org-cite vs org-ref 3.0

2022-03-21 Thread John Kitchin
rt backend >> - the same attributes are added to the enclosing paragraph >>https://linevi.ch/en/org-link-extra-attrs.html >> - a paragraph may have more than one link. >> It is possible to use link target similar to form values encoded into >> URI, but it hardly can

Re: citations: org-cite vs org-ref 3.0

2022-03-21 Thread John Kitchin
ize of the code. > > Chris > >> >> Ivy-bibtex supports, for example, inserting of org-cite citations, but >> not via org-cite-insert. > > And I have `org-cite-insert` working straight out of the box. > >> >> So there are currently no org-cite p

Re: citations: org-cite vs org-ref 3.0

2022-03-21 Thread John Kitchin
bibtex actions. The commentary in this file also discusses some challenges in relying exclusively on completing-read. My opinion of course. I don't think you need a special processor for ivy-bibtex. It could be wired to insert org-cites on its own. > > Bruce -- Professor John Ki

Re: citations: org-cite vs org-ref 3.0

2022-03-21 Thread John Kitchin
at the time. Maybe others will succeed in this another day. John --- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: citations: org-cite vs org-ref 3.0

2022-03-21 Thread John Kitchin
Vikas Rawal writes: > Dear John, > > Thanks very much for taking time to write a detailed reply. > > I do not think it is productive for the community to say or consider it > is a sad situation. > > From the perspective of a user, this was only meant to express a &g

Re: citations: org-cite vs org-ref 3.0

2022-03-21 Thread John Kitchin
On Sun, Mar 20, 2022 at 9:57 PM Timothy wrote: > Hi John, > > Thanks for your considered response. > > When you contrast org-cite and org-ref, you say: > > > With org-ref, bib(la)tex export is almost fully supported, and is easy, > > I find this odd as org-cite s

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