Re: undefined symbol: shm_open (ppc64le and aarch64)

2019-02-07 Thread Dominik 'Rathann' Mierzejewski
On Thursday, 07 February 2019 at 17:34, Florian Weimer wrote: > * Tom Callaway: > > > So, R links with rt if this configure check succeeds: > > > > AC_CHECK_LIB(rt, clock_gettime) > > > > Sure enough, on aarch64 and ppc64le, there is no clock_gettime in > > librt.so.1. I'm not sure _why_, but ther

Re: undefined symbol: shm_open (ppc64le and aarch64)

2019-02-07 Thread Florian Weimer
* Tom Callaway: > So, R links with rt if this configure check succeeds: > > AC_CHECK_LIB(rt, clock_gettime) > > Sure enough, on aarch64 and ppc64le, there is no clock_gettime in > librt.so.1. I'm not sure _why_, but there is probably a good reason. Hah! We moved clock_gettime to libc.so.6 in gli

Re: undefined symbol: shm_open (ppc64le and aarch64)

2019-02-07 Thread Tom Callaway
On 2/6/19 8:28 PM, Mamoru TASAKA wrote: > I don't know well about R, however that is probably because R-core > (-3.5.3-4.fc30) package already > requires librt.so on x86_64, i686, etc, while on aarch64 and ppc64le, it > does not, which probably indicates > that on x86_64, i686, etc R binary is a

Re: undefined symbol: shm_open (ppc64le and aarch64)

2019-02-07 Thread Florian Weimer
* Tom Callaway: > One of my packages failed the mass rebuild, but only on ppc64le and > aarch64. The error they both hit is this: > > Error: package or namespace load failed for 'BiocParallel' in > dyn.load(file, DLLpath = DLLpath, ...): > unable to load shared object > '/builddir/build/BUILDROOT

Re: undefined symbol: shm_open (ppc64le and aarch64)

2019-02-06 Thread J. Scheurich
| One of my packages failed the mass rebuild, but only on ppc64le and aarch64. The error they both hit is this: Error: package or namespace load failed for 'BiocParallel' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/builddir/build/BUILDROOT/R-BiocParallel-1.16.5-1.

Re: undefined symbol: shm_open (ppc64le and aarch64)

2019-02-06 Thread Mamoru TASAKA
Tom Callaway wrote on 2019/02/07 3:39: One of my packages failed the mass rebuild, but only on ppc64le and aarch64. The error they both hit is this: Error: package or namespace load failed for 'BiocParallel' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/builddir/bui

Re: undefined symbol: shm_open (ppc64le and aarch64)

2019-02-06 Thread Dominik 'Rathann' Mierzejewski
On Wednesday, 06 February 2019 at 19:39, Tom Callaway wrote: > One of my packages failed the mass rebuild, but only on ppc64le and > aarch64. The error they both hit is this: > > Error: package or namespace load failed for 'BiocParallel' in > dyn.load(file, DLLpath = DLLpath, ...): > unable to lo