RE: [DRAFT] [REPORT] Apache cTAKES Mar 2014

2014-03-12 Thread digital paula
Thank you so much Pei for this update on what's going on with latest development with cTAKES. I've been away for a while and trying to get back up to speed and your summary below saved a lot of time sifting through emails. Getting back into the program, I'm starting with understanding yt

YTEX install - one error after building

2014-03-25 Thread digital paula
Hi VJ, As part of testing, I did a fresh install of cTAKES with YTEX and everything installed correctly but after building I got one error pertaining to this page, five lines down. https://svn.apache.org/repos/asf/ctakes/branches/ytex/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex

temporal assertion module

2014-03-25 Thread digital paula
Hello cTAKES Developer Community, There are about 10 packages under temporal with a total of maybe 80 or 90 files but no XML descriptor. I see that the temporal module is not part of the released version in cTAKES since no documentation available in component use guide page: https://cwiki.ap

RE: temporal assertion module

2014-03-26 Thread digital paula
elease but > will take couple of months. We will email the cTAKES community once the > temporal system is ready to go. > --Guergana > > -----Original Message- > From: digital paula [mailto:cybersat...@hotmail.com] > Sent: Tuesday, March 25, 2014 6:42 PM > To: dev@ctake

RE: YTEX install - one error after building

2014-03-26 Thread digital paula
27;m > not sure if I tweaked my validator settings. > > -vj > > > > On Tue, Mar 25, 2014 at 6:16 PM, digital paula wrote: > > > Hi VJ, > > > > As part of testing, I did a fresh install of cTAKES with YTEX and > > everything installed correctly but af

RE: cTakes: question on updating cue words

2013-12-16 Thread digital paula
https://issues.apache.org/jira/browse/CTAKES (Feel free to create a new account). Even cooler if you could attach the affected files with the patch(diffs) and any tests. --Pei From: digital paula [mailto:cybersat...@hotmail.com] Sent: Monday, December 16, 2013 1:30 PM To: u...@ctak

RE: cTakes: question on updating cue words

2014-01-07 Thread digital paula
or Pei might have some info about whether its possible to modify negation cue words for that release? For example, I can see in the code it uses a "cue model" which can be found in ctakes-assertion-res but it is a binary and I'm not sure what kind. Is there any way to modify that

RE: svn commit: r1551805 - /ctakes/branches/ytex/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.java

2014-01-14 Thread digital paula
Hello cTAKES Developer Community, I'm a little behind on reading poststhis one is from last month. I think this issue is already addressed in current release? I'm still running the previous release...3.1.0. I just noticed something interesting, the negation didn't take when it is on

RE: cTakes: question on updating cue words

2014-01-14 Thread digital paula
irectly. But this still doesn't help Paula since she's trying to run the current release. I thought Matt or Pei might have some info about whether its possible to modify negation cue words for that release? For example, I can see in the code it uses a "cue model" which can b

RE: svn commit: r1551805 - /ctakes/branches/ytex/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.java

2014-01-15 Thread digital paula
are also set (within cTAKES, not OpenNLP) to be sentence breaks. > > > > (just FYI I haven't had a chance to look at the ytex branch, which the > > subject commit is about) > > > > -- James > > > > -Original Message----- > > From: dev-r

RE: sentence splitter & forks/branches

2014-01-17 Thread digital paula
umes sentences don't cross line boundaries. > > > OpenNLP is used to find sentence breaks, but then if newlines are > > > found, those are also set (within cTAKES, not OpenNLP) to be sentence > > breaks. > > > > > > (just FYI I haven't had a chance to look at th

RE: sentence splitter & forks/branches

2014-01-18 Thread digital paula
and use some simple algorithm to link your cue words > with nearby entities. > 2) Acquire training data and try to re-train the assertion module with > your cue word additions. I believe they used the i2b2 challenge 2010 > concept assertion dataset which is available with a data use

RE: sentence splitter & forks/branches

2014-01-19 Thread digital paula
to assertion and dependency parser needed to support multiline > sentences are in the ytex branch. another pair of eyes and more testing is > always welcome > > On Friday, January 17, 2014, digital paula wrote: > > > > > > > > > Hello again cTAKES Com

RE: sentence detector newline behavior

2014-01-27 Thread digital paula
Tim, I just had to chime in on a comment you made.My deadline has been extended a bit on my pressing issue but I do intend to get back to testing per VJ's fix or maybe another fix is in the works based on latest emails...I need to read them again since a lot has been stated on the issue

RE: Sectionizer

2014-02-09 Thread digital paula
John, I've been out of the loop for a few weeks now w/the cTAKES developer list and will be until end of Feb... too many pressing deadlines. I have to step through the code again to verify if sectionizer uses reg ex but I'm pretty sure that it does. Hmmm, that does sound interesting to trai