Change from SNOMEDCT to SNOMEDCT_US affecting v_snomed_fword_lookup

Hi folks, I was having an issue with the current build (from svn) of ctakes/ytex not identifying any annotations as some folks on this board. I traced it to the fact that the UMLS database has at sometime in the relatively recent past changed the SAB tag in the MRCONSO table for SNOMED terms from

Re: Change from SNOMEDCT to SNOMEDCT_US affecting v_snomed_fword_lookup

Thanks! Tim On Sat, Aug 16, 2014 at 9:07 AM, John Green wrote: > Great catch!— > Sent from Mailbox for iPhone > > On Sat, Aug 16, 2014 at 2:53 AM, Tim O'Connell > wrote: > > > Hi folks, > > I was having an issue with the current build (from svn) of ct

Re: Change from SNOMEDCT to SNOMEDCT_US affecting v_snomed_fword_lookup

did you successfully run > ytex with the ctakes dictionary-lookup? > > > JG > — > Sent from Mailbox for iPhone > > On Sat, Aug 16, 2014 at 2:53 AM, Tim O'Connell > wrote: > > > Hi folks, > > I was having an issue with the current build (from svn) of cta

Re: managing ctakes resources on classpath

Thanks Kim & Pei. If it helps any, I'm getting the same error in Eclipse. I just checked out the code this morning from SVN. Using -DskipTests=true I was able to get it to build from the command line. Tim On Wed, Aug 20, 2014 at 12:41 PM, Kim Ebert wrote: > I've added issue 307. > > https

Re: managing ctakes resources on classpath

test components that depend on lvg-res), but not sure > about potentially other test errors. > > --Pei > > > -Original Message- > > From: Tim O'Connell [mailto:tim.oconn...@gmail.com] > > Sent: Monday, August 25, 2014 12:38 AM > > To: dev@ctakes.apa

Re: v_document_cui_sent not being populated

Hi Clayton, (One of) problems here is that the source for the creation of the v_document_cui_sent view contains an error (I think). You can see the view source (in MySQL anyway) by using 'show create view v_document_cui_sent'. You'll then see 'where (`ref_uima_type`.`uima_type_name` = 'edu.m

Re: v_document_cui_sent not being populated

f you can attach a patch for it (perhaps a good idea to > search/replace on the entire project) and we can include in the next > 3.2.1 patch... > --Pei > > On Mon, Sep 8, 2014 at 4:50 PM, Tim O'Connell > wrote: > > Hi Clayton, > > > > (One of) proble

Re: Boston cTAKES Meetup

Hi Folks, Any idea if we can set up a WebEx for those of us who can't attend (I'm in Vancouver)? Best, Tim On Mon, Sep 22, 2014 at 2:40 PM, John Green wrote: > Will this be recorded? > — > Sent from Mailbox > > > On Mon, Sep 22, 2014 at 4:30 PM, Pei Chen wrot

Re: Boston cTAKES Meetup

thanks Pei. On Mon, Sep 22, 2014 at 7:17 PM, Pei Chen wrote: > the meetup formats are usually casual/informal, but I'll check to see > if that's possible. will post it up if it's available. > > On Mon, Sep 22, 2014 at 5:42 PM, Tim O'Connell > wrote: >

YTEX Class Conflict

Hi Folks, I've run into a strange problem. I built ctakes a few weeks ago on a windows box, and everything worked great, no problem; now I've set it up on a linux box in the past few days, and doing the install the exact same way, the ytex jetty web app wouldn't launch (error is pasted in below).