Turns out that this problem was indeed due to the fact that package names
had changed from v4.x.x to v5.x.x from ...drugner... to ..drug.ner..
But across the sources and typesystem files it had not been completely done
and had been left in a halfway state.By reverting the package spec of
reso
Thanks for the update. We can add it a "known issues" in the wiki
https://github.com/apache/ctakes/wiki . I thought that we had one at some
point, but it may have been removed.
From: Peter Abramowitsch
Sent: Wednesday, December 4, 2024 10:25 AM
To: dev@ctakes.
Hi Sean et al
Problem still is though, that even when processing it creates nothing at
all due to an out of bounds exception that may be due to some parameters
that need passing to the annotator,
but I don't see any pipeline or piper examples where these are passed. It
generates DrugMentions, t
The Drug-ner module was created before my time, and I haven't ever had reason
to use it.
I think that your oob exception is, as you guess, coming from missing or bad
parameters. You can try using the following in your piper file:
package org.apache.ctakes.drugner.ae
set DISTANCE_ANN_TYPE=org.a
Thanks Sean you are really a font of useful information!
Yes, those parameters did enable the code to run without erroring. But
like you said all it did was highlight the fact that it's not a good
solution and creates vast numbers of bloated objects with little to no
relevant data, when all that
