Re: Build issues today [EXTERNAL]

2024-01-30 Thread Jeffery Painter
Thanks Sean - it is working again with the 5.0.0 models. I'm actually glad you did not roll in my updates yet, as I found another subtle bug in the creation of the concept graphs and I have implemented 4 more of the kernel metrics which we are investigating based on the paper from Sanchez and B

Re: Build issues today [EXTERNAL]

2024-01-30 Thread Jeffery Painter
Hello all, I've closed 2 of my PRs and pushed 2 new ones to replace those with the latest code fixes and updates. https://github.com/apache/ctakes/pull/13 https://github.com/apache/ctakes/pull/14 Thanks for your time and consideration of my contributions :-) No changes were required of the

Re: Build issues today [EXTERNAL]

2024-01-30 Thread Finan, Sean
Hi Jeff, This looks pretty nice. Thank you for the reference - I gave it a skim but will be more thorough in a second run through whenever I get the time. Sean From: Jeffery Painter Sent: Tuesday, January 30, 2024 9:02 AM To: dev@ctakes.apache.org Subject: Re:

Re: Build issues today [EXTERNAL]

2024-01-30 Thread Jeffery Painter
Thanks Sean, I think we may end up with a series of pubs out of this work. I just want to emphasize how much more efficient it is to compute these metrics using cTakes than the old Perl UMLS::Similarity module. I don't think anyone realizes the amount of computational time this saves us (days

Re: Build issues today [EXTERNAL]

2024-01-30 Thread Finan, Sean
Hi Jeff, That sounds great - I am happy when ctakes beneficial in any way. As far as simplicity goes, there is an installation tool in 5.0.0-SNAPSHOT: https://repository.apache.org/content/repositories/snapshots/org/apache/ctakes/ctakes-dockhand/5.0.0-SNAPSHOT/ I have to run some final tests, bu