Hello,
I’ve run into a problem and a question when running cTAKES. If I have a
document and process it through cTAKES, then the XMI output will contain
numerous XML tags. The tags our lab is interested in are the CUIs, for example,
the XMI tag
Would indicate the CUI C0025859 for Metoprolol-co
Hi John,
Each annotation gets a unique concept for every combination of possible codes,
semantic types, etc.
You have pasted a good example of when that happens: (abbreviated)
< code="7092007" tui="T109"/>
This is definitely a little confusing when the CUI for all 4 'unique' concepts
is th
Awesome, thank you very much!
From: Finan, Sean
Date: Thursday, February 2, 2023 at 1:53 PM
To: dev@ctakes.apache.org
Subject: Re: CUI Question [EXTERNAL]
Hi John,
Each annotation gets a unique concept for every combination of possible codes,
semantic types, etc.
You have pasted a good example
Hi Sean,
I’ve got one additional question, sorry if it’s a naive one. If I send cTAKES
an XMI file as input, is the file name stored anywhere in the jCas object that
is created?
The problem I’m running into is I’m trying to retrieve the file name via
File noteFile = new File(ViewUriUtil.getURI(
Hi John,
To start, I would use XmiTreeReader to read in the XMI file(s). It can read a
single file or multiple files in a directory tree.
In your piper file, just add the line: "reader XmiTreeReader"
XmiTreeReader will automatically store metadata like doc ID, and file path.
The file path is
