RE: Issue in running developers version of Apache cTakes to process DefaultClinicalPipeline

2022-04-07 Thread Anand, Ankit (Campus)
Thank you so much Peter :) My Issue is resolved. I was giving -xmiOut in my command line instead of --xmiOut which was causing the problem. Best, Ankit Anand Graduate Assistant | Informatics Institute, UAB Department of Computer Science, UAB University of Alabama at Birmingham Contact - (205

RE: Issue in running developers version of Apache cTakes to process DefaultClinicalPipeline

2022-04-07 Thread Anand, Ankit (Campus)
Thank you, the Issue below is resolved, but I am getting this error message. Is this something related with my setup. I have setup ctakes on server which basically runs on linux. Since the build did not give any error and was successful, I think the setup should be fine. [ankitk@login004 trunk]$

Re: Issue in running developers version of Apache cTakes to process DefaultClinicalPipeline [EXTERNAL]

2022-04-07 Thread Finan, Sean
Hi Ankit, Did you add CuiListFileWriter to your pipeline? I don't think that it is in the default pipeline. As long as you are running the latest code it should be present. It is in ctakes-core org/apache/ctakes/core/cc/CuiListFileWriter.java It was added to ctakes on 02/14/2018. Sean __