Re: rule-based lookup for custom lexicon [EXTERNAL]

2021-05-18 Thread Finan, Sean
To which ctakes component(s) are you referring? From: Greg Silverman Sent: Sunday, May 16, 2021 6:02 PM To: dev@ctakes.apache.org; Himanshu Shekhar Sahoo Subject: rule-based lookup for custom lexicon [EXTERNAL] * External Email - Caution * I looked all

Re: rule-based lookup for custom lexicon [EXTERNAL]

2021-05-18 Thread Greg Silverman
Hi Sean, I was wondering if there was a way to use rule-base lookup of a custom lexicon within cTAKES (say a locally curated list of covd-19 symptoms). When I Googled around, I stumbled on UIMA Ruta, but couldn't find anything wrt to cTAKES specifics. Thanks! Greg-- On Tue, May 18, 2021 at 10:0

Re: rule-based lookup for custom lexicon [EXTERNAL]

2021-05-18 Thread Finan, Sean
Hi Greg, >From 30,000 ft, I think that you would want to use the RutaEngine. https://uima.apache.org/d/ruta-current/tools.ruta.book.html#ugr.tools.ruta.ae.basic https://javadoc.io/doc/org.apache.uima/ruta-core/latest/org/apache/uima/ruta/engine/RutaEngine.html http://svn.apache.org/repos/asf/uima

Re: rule-based lookup for custom lexicon [EXTERNAL] [SUSPICIOUS]

2021-05-18 Thread Miller, Timothy
But Sean, isn't what he's asking for essentially already implemented in cTAKES as the custom dictionary? I'm currently using that approach for my covid container: https://github.com/Machine-Learning-for-Medical-Language/ctakes-covid-container Tim From: Fi

Re: rule-based lookup for custom lexicon [EXTERNAL] [SUSPICIOUS]

2021-05-18 Thread Peter Abramowitsch
Hi All, yes, the line between "lookup" and rule execution is a little blurry sometimes. Here's some more blurriness. I've done something related, adapting a UIMA tokens regex engine for Ctakes. You create a new type in the TypeSystem. In my case it uses CONLLDEP Annotations as the tokens to